Genome Sequence of Amycolatopsis sp Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete

被引:36
作者
Davis, Jennifer R. [2 ]
Goodwin, Lynne A. [3 ,4 ]
Woyke, Tanja [3 ]
Teshima, Hazuki [4 ]
Bruce, David [3 ,4 ]
Detter, Chris [3 ,4 ]
Tapia, Roxanne [3 ,4 ]
Han, Shunsheng [4 ]
Han, James [3 ]
Pitluck, Sam [3 ]
Nolan, Matt [3 ]
Mikhailova, Natalia [3 ]
Land, Miriam L.
Sello, Jason K. [1 ]
机构
[1] Brown Univ, Dept Chem, Providence, RI 02912 USA
[2] Brown Univ, Dept Mol Pharmacol Physiol & Biotechnol, Providence, RI 02912 USA
[3] DOE Joint Genome Inst, Walnut Creek, CA USA
[4] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA
基金
美国国家科学基金会;
关键词
LIGNIN DEGRADATION;
D O I
10.1128/JB.00186-12
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We announce the availability of a high-quality draft of the genome sequence of Amycolatopsis sp. strain 39116, one of few bacterial species that are known to consume the lignin component of plant biomass. This genome sequence will further ongoing efforts to use microorganisms for the conversion of plant biomass into fuels and high-value chemicals.
引用
收藏
页码:2396 / 2397
页数:2
相关论文
共 15 条
[1]   DEGRADATION OF SOFTWOOD, HARDWOOD, AND GRASS LIGNOCELLULOSES BY 2 STREPTOMYCES STRAINS [J].
ANTAI, SP ;
CRAWFORD, DL .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1981, 42 (02) :378-380
[2]   Solexa Ltd [J].
Bennett, S .
PHARMACOGENOMICS, 2004, 5 (04) :433-438
[3]   Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation [J].
Brown, Margaret E. ;
Walker, Mark C. ;
Nakashige, Toshiki G. ;
Iavarone, Anthony T. ;
Chang, Michelle C. Y. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (45) :18006-18009
[4]   Base-calling of automated sequencer traces using phred.: II.: Error probabilities [J].
Ewing, B ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :186-194
[5]   Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].
Ewing, B ;
Hillier, L ;
Wendl, MC ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :175-185
[6]   Consed: A graphical tool for sequence finishing [J].
Gordon, D ;
Abajian, C ;
Green, P .
GENOME RESEARCH, 1998, 8 (03) :195-202
[7]  
Han C, 2006, CSREA PRESS, P141
[8]   Prodigal: prokaryotic gene recognition and translation initiation site identification [J].
Hyatt, Doug ;
Chen, Gwo-Liang ;
LoCascio, Philip F. ;
Land, Miriam L. ;
Larimer, Frank W. ;
Hauser, Loren J. .
BMC BIOINFORMATICS, 2010, 11
[9]   Actinomycetes and lignin degradation [J].
Kirby, R .
ADVANCES IN APPLIED MICROBIOLOGY, VOL 58, 2006, 58 :125-+
[10]   Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380