Cecal microbiota of feedlot cattle fed a four-species Bacillus supplement

As commercial fed cattle consume large amounts of concentrate feedstuffs, hindgut health can be challenged. The objective of this study was to evaluate the effects of a commercially available Bacillus feed additive on cattle health outcomes and cecal microbiota of fed cattle at the time of harvest. Commercial cattle from a single feedlot were identified for characterization of cecal microbial communities using 16S ribosomal ribonucleic acid gene sequencing. All cattle were fed a common corn-based finishing diet. Control cattle (CON) were administered no treatment while treated cattle (TRT) were supplemented daily with 0.050 g of MicroSaf 4C 40 (2 billion colony forming units of Bacillus spp.; Phileo by Lesaffre, Milwaukee, WI). Immediately after harvest and evisceration, the cecal contents of cattle were sampled. After DNA extraction, amplification, and sequencing, reads from CON samples (N = 12) and TRT samples (N = 12) were assigned taxonomy using the SILVA 138 database. Total morbidity, first treatment of atypical interstitial pneumonia, and early shipments for harvest were decreased among TRT cattle compared to CON cattle (P <= 0.021). On average, cecal microbiota from TRT cattle had greater alpha diversity than microbiota from CON cattle as measured by Shannon diversity, Pielou's evenness, and feature richness (P < 0.010). Additionally, TRT microbial communities were different (P = 0.001) and less variable (P < 0.001) than CON microbial communities when evaluated by unweighted UniFrac distances. By relative abundance across all samples, the most prevalent phyla were Firmicutes (55.40%, SD = 15.97) and Bacteroidetes (28.17%, SD = 17.74) followed by Proteobacteria (6.75%, SD = 10.98), Spirochaetes (4.54%, SD = 4.85), and Euryarchaeota (1.77%, SD = 3.00). Spirochaetes relative abundance in TRT communities was greater than that in CON communities and was differentially abundant between treatments by ANCOM testing (W = 11); Monoglobaceae was the only family-level taxon identified as differentially abundant (W = 59; greater mean relative abundance in TRT group by 2.12 percentage points). Half (N = 6) of the CON samples clustered away from all other samples based on principal coordinates and represented cecal dysbiosis among CON cattle. The results of this study indicated that administering a four-species blend of Bacillus positively supported the cecal microbial communities of finishing cattle. Further research is needed to explore potential mechanisms of action of Bacillus DFM products in feedlot cattle. Supplementing commercial feedlot cattle with four species of Bacillus indicated potential for improving hindgut microbial diversity and preventing dysbiosis. Differences in cecal microbial communities observed could be associated with decreased energy density of digesta, decreased pathogen challenges, and decreased methane production among cattle fed Bacillus. Lay Summary Microbes in the rumen break down fiber and complex nutrients into energy that cattle can absorb. Rumen microbes are becoming well studied, but the microbes of the hindgut-specifically of the cecum and large intestine-are less well-studied. As feedlot cattle eat large amounts of grain, maintaining health and balance of microbes in the hindgut is important. Overconsumption of a meal causes a greater proportion of digestion to occur in the hindgut, causing greater acid production that damages the gastrointestinal lining. If dietary microbial supplements support a more diverse microbial population, the challenges caused by greater hindgut digestion could be mitigated. To test this, cecal microbes were characterized after feedlot cattle were fed a conventional diet, with or without a supplement of Bacillus bacteria. Cecal samples from cattle that were fed Bacillus had greater microbial diversity. Approximately half of the cecal samples from cattle that were not fed Bacillus had disrupted microbial balance. Based on taxonomic assignment, bacteria observed in these disrupted samples indicated greater energy density of digesta and increased methane production. Supplementing feedlot cattle with Bacillus could improve hindgut microbial diversity.