Structure-Based Insights into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition by Mammalian Cysteine Dioxygenase

被引:26
作者
Driggers, Camden M. [1 ]
Kean, Kelsey M. [1 ]
Hirschberger, Lawrence L. [2 ]
Cooley, Richard B. [1 ]
Stipanuk, Martha H. [2 ]
Karplus, P. Andrew [1 ]
机构
[1] Oregon State Univ, Dept Biochem & Biophys, 2011 Ag & Life Sci Bldg, Corvallis, OR 97331 USA
[2] Cornell Univ, Dept Nutr Sci, 227 Savage Hall, Ithaca, NY 14853 USA
关键词
metalloenzyme; thiol oxidation; high-spin ferrous iron; iron-sulfur; sulfur metabolism; INTRACELLULAR CYSTEINE; AZOTOBACTER-VINELANDII; PROTEASOME SYSTEM; ACTIVE-SITE; IRON CENTER; SUBSTRATE; INTERMEDIATE; MECHANISM; PH; PURIFICATION;
D O I
10.1016/j.jmb.2016.07.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In mammals, the non-heme iron enzyme cysteine dioxygenase (CDO) helps regulate Cys levels through converting Cys to Cys sulfinic acid. Its activity is in part modulated by the formation of a Cys93-Tyr157 crosslink that increases its catalytic efficiency over 10-fold. Here, 21 high-resolution mammalian CDO structures are used to gain insight into how the Cys-Tyr crosslink promotes activity and how select competitive inhibitors bind. Crystal structures of crosslink-deficient C93A and Y157F variants reveal similar similar to 1.0-A shifts in the side chain of residue 157, and both variant structures have a new chloride ion coordinating the active site iron. Cys binding is also different from wild-type CDO, and no Cys-persulfenate forms in the C93A or Y157F active sites at pH 6.2 or 8.0. We conclude that the crosslink enhances activity by positioning the Tyr157 hydroxyl to enable proper Cys binding, proper oxygen binding, and optimal chemistry. In addition, structures are presented for homocysteine (Hcy), D-Cys, thiosulfate, and azide bound as competitive inhibitors. The observed binding modes of Hcy and D-Cys clarify why they are not substrates, and the binding of azide shows that in contrast to what has been proposed, it does not bind in these crystals as a superoxide mimic. (C) 2016 Elsevier Ltd. All rights reserved.
引用
收藏
页码:3999 / 4012
页数:14
相关论文
共 66 条
  • [1] PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution
    Adams, Paul D.
    Afonine, Pavel V.
    Bunkoczi, Gabor
    Chen, Vincent B.
    Davis, Ian W.
    Echols, Nathaniel
    Headd, Jeffrey J.
    Hung, Li-Wei
    Kapral, Gary J.
    Grosse-Kunstleve, Ralf W.
    McCoy, Airlie J.
    Moriarty, Nigel W.
    Oeffner, Robert
    Read, Randy J.
    Richardson, David C.
    Richardson, Jane S.
    Terwilliger, Thomas C.
    Zwart, Peter H.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 213 - 221
  • [2] A trispyrazolylborato iron cysteinato complex efficiently mimics the cysteine dioxygenation process: mechanistic insights
    Alberto, Marta E.
    [J]. CHEMICAL COMMUNICATIONS, 2015, 51 (39) : 8369 - 8372
  • [3] The mechanism of cysteine oxygenation by cysteine dioxygenase enzymes
    Aluri, Swathi
    de Visser, Sam P.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (48) : 14846 - +
  • [4] Spectroscopic and Computational Investigation of the H155A Variant of Cysteine Dioxygenase: Geometric and Electronic Consequences of a Third-Sphere Amino Acid Substitution
    Blaesi, Elizabeth J.
    Fox, Brian G.
    Brunold, Thomas C.
    [J]. BIOCHEMISTRY, 2015, 54 (18) : 2874 - 2884
  • [5] Spectroscopic and Computational Investigation of Iron(III) Cysteine Dioxygenase: Implications for the Nature of the Putative Superoxo-Fe(III) Intermediate
    Blaesi, Elizabeth J.
    Fox, Brian G.
    Brunold, Thomas C.
    [J]. BIOCHEMISTRY, 2014, 53 (36) : 5759 - 5770
  • [6] Structural Perspective on Enzymatic Halogenation
    Blasiak, Leah C.
    Drennan, Catherine L.
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2009, 42 (01) : 147 - 155
  • [7] Heterologous expression, purification, and characterization of recombinant rat cysteine dioxygenase
    Chai, SC
    Jerkins, AA
    Banik, JJ
    Shalev, I
    Pinkham, JL
    Uden, PC
    Maroney, MJ
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (11) : 9865 - 9869
  • [8] Probes of the catalytic site of cysteine dioxygenase
    Chai, Sergio C.
    Bruyere, John R.
    Maroney, Michael J.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (23) : 15774 - 15779
  • [9] Single Turnover of Substrate-Bound Ferric Cysteine Dioxygenase with Superoxide Anion: Enzymatic Reactivation, Product Formation, and a Transient Intermediate
    Crawford, Joshua A.
    Li, Wei
    Pierce, Brad S.
    [J]. BIOCHEMISTRY, 2011, 50 (47) : 10241 - 10253
  • [10] Non-chemical proton-dependent steps prior to O2-activation limit Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase (MDO) catalysis
    Crowell, Joshua K.
    Sardar, Sinjinee
    Hossain, Mohammad S.
    Foss, Frank W., Jr.
    Pierce, Brad S.
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2016, 604 : 86 - 94