Microfluidics applications for high-throughput single cell sequencing

被引:63
作者
Zhou, Wen-min [1 ,2 ]
Yan, Yan-yan [3 ]
Guo, Qiao-ru [1 ,2 ]
Ji, Hong [1 ,2 ]
Wang, Hui [4 ]
Xu, Tian-tian [4 ]
Makabel, Bolat [5 ]
Pilarsky, Christian [6 ]
He, Gen [1 ,2 ]
Yu, Xi-yong [1 ,2 ]
Zhang, Jian-ye [1 ,2 ]
机构
[1] Guangzhou Med Univ, Sch Pharmaceut Sci, Key Lab Mol Target & Clin Pharmacol, State & NMPA Key Lab Resp Dis, Guangzhou 511436, Peoples R China
[2] Guangzhou Med Univ, Affiliated Hosp 5, Guangzhou 511436, Peoples R China
[3] Shanxi Datong Univ, Sch Med, Datong 037009, Peoples R China
[4] Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Guangzhou Inst Pediat, Guangzhou 510623, Peoples R China
[5] Xinjiang Inst Mat Med, Urumqi 830004, Peoples R China
[6] Friedrich Alexander Univ Erlangen Nuremberg FAU, Univ Hosp Erlangen, Dept Surg, Erlangen, Germany
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
Single cell separation; Single cell RNA sequencing (scRNA-seq); High-throughput; Microfluidic; Droplets; Biomedical applications; WHOLE-TRANSCRIPTOME ANALYSIS; CIRCULATING TUMOR-CELLS; MESSENGER-RNA-SEQ; GENE-EXPRESSION; DIGITAL PCR; HETEROGENEITY; EVOLUTION; TECHNOLOGY; ENRICHMENT; PLATFORM;
D O I
10.1186/s12951-021-01045-6
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The inherent heterogeneity of individual cells in cell populations plays significant roles in disease development and progression, which is critical for disease diagnosis and treatment. Substantial evidences show that the majority of traditional gene profiling methods mask the difference of individual cells. Single cell sequencing can provide data to characterize the inherent heterogeneity of individual cells, and reveal complex and rare cell populations. Different microfluidic technologies have emerged for single cell researches and become the frontiers and hot topics over the past decade. In this review article, we introduce the processes of single cell sequencing, and review the principles of microfluidics for single cell analysis. Also, we discuss the common high-throughput single cell sequencing technologies along with their advantages and disadvantages. Lastly, microfluidics applications in single cell sequencing technology for the diagnosis of cancers and immune system diseases are briefly illustrated.
引用
收藏
页数:21
相关论文
共 166 条
  • [1] Flow cytometry: basic principles and applications
    Adan, Aysun
    Alizada, Gunel
    Kiraz, Yagmur
    Baran, Yusuf
    Nalbant, Ayten
    [J]. CRITICAL REVIEWS IN BIOTECHNOLOGY, 2017, 37 (02) : 163 - 176
  • [2] Cellular Heterogeneity and Molecular Evolution in Cancer
    Almendro, Vanessa
    Marusyk, Andriy
    Polyak, Kornelia
    [J]. ANNUAL REVIEW OF PATHOLOGY: MECHANISMS OF DISEASE, VOL 8, 2013, 8 : 277 - 302
  • [3] Advances in Microfluidics-Based Technologies for Single Cell Culture
    Alonso, Daniel Garcia
    Yu, Mengchao
    Qu, Haijun
    Ma, Liang
    Shen, Feng
    [J]. ADVANCED BIOSYSTEMS, 2019, 3 (11)
  • [4] Visualization and cellular hierarchy inference of single-cell data using SPADE
    Anchang, Benedict
    Hart, Tom D. P.
    Bendall, Sean C.
    Qiu, Peng
    Bjornson, Zach
    Linderman, Michael
    Nolan, Garry P.
    Plevritis, Sylvia K.
    [J]. NATURE PROTOCOLS, 2016, 11 (07) : 1264 - 1279
  • [5] Formation of dispersions using "flow focusing" in microchannels
    Anna, SL
    Bontoux, N
    Stone, HA
    [J]. APPLIED PHYSICS LETTERS, 2003, 82 (03) : 364 - 366
  • [6] [Anonymous], 2012, Science, V336, P976, DOI 10.1126/science.336.6084.976
  • [7] Method of the Year 2012
    不详
    [J]. NATURE METHODS, 2013, 10 (01) : 1 - 1
  • [8] Recent developments in microfluidic large scale integration
    Araci, Ismail Emre
    Brisk, Philip
    [J]. CURRENT OPINION IN BIOTECHNOLOGY, 2014, 25 : 60 - 68
  • [9] Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes
    Armand, Ethan J.
    Li, Junhao
    Xie, Fangming
    Luo, Chongyuan
    Mukamel, Eran A.
    [J]. NEURON, 2021, 109 (01) : 11 - 26
  • [10] Simplified Drop-seq workflow with minimized bead loss using a bead capture and processing microfluidic chip
    Biocanin, Marjan
    Bues, Johannes
    Dainese, Riccardo
    Amstad, Esther
    Deplancke, Bart
    [J]. LAB ON A CHIP, 2019, 19 (09) : 1610 - 1620