The 1H, 13C and 15N backbone and side-chain assignment of the RRM domain of SC35, a regulator of pre-mRNA splicing

被引:2
作者
Clayton, Jonathan C. [1 ]
Phelan, Marie [1 ]
Goult, Benjamin T. [2 ]
Hautbergue, Guillaume M. [3 ]
Wilson, Stuart A. [3 ]
Lian, Lu-Yun [1 ]
机构
[1] Univ Liverpool, Sch Biol Sci, NMR Ctr Struct Biol, Liverpool L69 7ZB, Merseyside, England
[2] Univ Leicester, Dept Biochem, Leicester LE1 9HN, Leics, England
[3] Univ Sheffield, Dept Mol Biol & Biotechnol, Western Bank, Sheffield S10 2TN, S Yorkshire, England
基金
英国生物技术与生命科学研究理事会;
关键词
SC35; mRNA splicing; RRM domain; SFRS2; PR264; Splicing factor; Arginine/serine-rich; 2; NMR; SR PROTEIN FAMILY; TAP BINDING;
D O I
10.1007/s12104-010-9254-5
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The serine-arginine rich family of proteins play important roles in the regulation of both constitutive and alternative splicing. SC35 (also known as SFRS2 and PR264) is a member of this family and contains one RNA recognition motif (RRM domain) and a RS domain at the C-terminus which is enriched with arginine and serine residues. SC35 is specifically involved in major regulatory pathways for cell proliferation and cell cycle progression. Determining the structure of SC35 would enable greater understanding of how its structure relates to its many functions. Complete H-1, C-13 and N-15 assignments of the RRM domain of SC35 are presented. The assignments were obtained using 2D heteronuclear and 3D triple-resonance experiments with the uniformly [N-15,C-13]-labelled protein. The chemical shifts are used to predict the 3-dimensional structure of this RRM domain in the absence of RNA.
引用
收藏
页码:7 / 10
页数:4
相关论文
共 12 条
[1]   DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure [J].
Cheung, Ming-Sin ;
Maguire, Mahon L. ;
Stevens, Tim J. ;
Broadhurst, R. William .
JOURNAL OF MAGNETIC RESONANCE, 2010, 202 (02) :223-233
[2]   Dilated cardiomyopathy caused by tissue-specific ablation of SC35 in the heart [J].
Ding, JH ;
Xu, XD ;
Yang, DM ;
Chu, PH ;
Dalton, ND ;
Ye, Z ;
Yeakley, JM ;
Cheng, HP ;
Xiao, RP ;
Ross, J ;
Chen, J ;
Fu, XD .
EMBO JOURNAL, 2004, 23 (04) :885-896
[3]   A role for SC35 and hnRNPA1 in the determination of amyloid precursor protein isoforms [J].
Donev, R. ;
Newall, A. ;
Thome, J. ;
Sheer, D. .
MOLECULAR PSYCHIATRY, 2007, 12 (07) :681-690
[4]   FACTOR REQUIRED FOR MAMMALIAN SPLICEOSOME ASSEMBLY IS LOCALIZED TO DISCRETE REGIONS IN THE NUCLEUS [J].
FU, XD ;
MANIATIS, T .
NATURE, 1990, 343 (6257) :437-441
[5]   Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8 [J].
Hargous, Yann ;
Hautbergue, Guillaume M. ;
Tintaru, Aura M. ;
Skrisovska, Lenka ;
Golovanov, Alexander P. ;
Stevenin, James ;
Lian, Lu-Yun ;
Wilson, Stuart A. ;
Allain, Frederic H. - T. .
EMBO JOURNAL, 2006, 25 (21) :5126-5137
[6]   SRprises along a messenger's journey [J].
Huang, YQ ;
Steitz, JA .
MOLECULAR CELL, 2005, 17 (05) :613-615
[7]   The SR protein family of splicing factors: master regulators of gene expression [J].
Long, Jennifer C. ;
Caceres, Javier F. .
BIOCHEMICAL JOURNAL, 2009, 417 :15-27
[8]   SR Protein Family Members Display Diverse Activities in the Formation of Nascent and Mature mRNPs In Vivo [J].
Sapra, Aparna K. ;
Aenkoe, Minna-Liisa ;
Grishina, Inna ;
Lorenz, Mike ;
Pabis, Marta ;
Poser, Ina ;
Rollins, Jarod ;
Weiland, Eva-Maria ;
Neugebauer, Karla M. .
MOLECULAR CELL, 2009, 34 (02) :179-190
[9]   Structural and functional analysis of RNA and TAP binding to SF2/ASF [J].
Tintaru, Aura M. ;
Hautbergue, Guillaume M. ;
Hounslow, Andrea M. ;
Hung, Ming-Lung ;
Lian, Lu-Yun ;
Craven, C. Jeremy ;
Wilson, Stuart A. .
EMBO REPORTS, 2007, 8 (08) :756-762
[10]   The CCPN data model for NMR spectroscopy: Development of a software pipeline [J].
Vranken, WF ;
Boucher, W ;
Stevens, TJ ;
Fogh, RH ;
Pajon, A ;
Llinas, P ;
Ulrich, EL ;
Markley, JL ;
Ionides, J ;
Laue, ED .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, 59 (04) :687-696