Near-Atomic Resolution Structure Determination in Over-Focus with Volta Phase Plate by Cs-Corrected Cryo-EM

被引:37
作者
Fan, Xiao [1 ,2 ]
Zhao, Lingyun [1 ,2 ]
Liu, Chuan [1 ,2 ]
Zhang, Jin-Can [3 ,4 ]
Fan, Kelong [5 ]
Yan, Xiyun [5 ,6 ]
Peng, Hai-Lin [3 ,4 ]
Lei, Jianlin [1 ]
Wang, Hong-Wei [1 ,2 ]
机构
[1] Tsinghua Univ, Beijing Adv Innovat Ctr Struct Biol, Sch Life Sci, Minist Educ,Key Lab Prot Sci, Beijing 100084, Peoples R China
[2] Tsinghua Univ, Tsinghua Peking Joint Ctr Life Sci, Beijing 100084, Peoples R China
[3] Peking Univ, Beijing Sci & Engn Ctr Nanocarbons, Beijing Natl Lab Mol Sci, Ctr Nanochem,Coll Chem & Mol Engn, Beijing 100871, Peoples R China
[4] Peking Univ, Acad Adv Interdisciplinary Studies, Beijing 100871, Peoples R China
[5] Chinese Acad Sci, Key Lab Prot & Peptide Pharmaceut, CAS Univ Tokyo Joint Lab Struct Virol & Immunol, Inst Biophys, Beijing 100101, Peoples R China
[6] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
基金
北京市自然科学基金; 中国博士后科学基金;
关键词
CONTRAST CRYOELECTRON TOMOGRAPHY; TRANSMISSION ELECTRON-MICROSCOPY; BEAM-INDUCED MOTION; PROTEIN COMPLEX; H-FERRITIN; VISUALIZATION; NANOPARTICLES; MICROGRAPHS; DETECTORS; RIBOSOME;
D O I
10.1016/j.str.2017.08.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Volta phase plate (VPP) is a recently developed transmission electron microscope (TEM) apparatus that can significantly enhance the image contrast of biological samples in cryoelectron microscopy, and therefore provide the possibility to solve structures of relatively small macromolecules at high-resolution. In this work, we performed theoretical analysis and found that using phase plate on objective lens spherical aberration (Cs)-corrected TEM may gain some interesting optical properties, including the over-focus imaging of macromolecules. We subsequently evaluated the imaging strategy of frozen-hydrated apo-ferritin with VPP on a Cs-corrected TEM and obtained the structure of apo-ferritin at near-atomic resolution from both under-and over-focused dataset, illustrating the feasibility and new potential of combining VPP with Cs-corrected TEM for high-resolution cryo-EM.
引用
收藏
页码:1623 / +
页数:11
相关论文
共 49 条
[21]   Zernike phase contrast cryo-electron tomography of whole mounted frozen cells [J].
Fukuda, Yoshiyuki ;
Nagayama, Kuniaki .
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 177 (02) :484-489
[22]   Effect of a physical phase plate on contrast transfer in an aberration-corrected transmission electron microscope [J].
Gamm, B. ;
Schultheiss, K. ;
Gerthsen, D. ;
Schroeder, R. R. .
ULTRAMICROSCOPY, 2008, 108 (09) :878-884
[23]   Invited Review Article: Methods for imaging weak-phase objects in electron microscopy [J].
Glaeser, Robert M. .
REVIEW OF SCIENTIFIC INSTRUMENTS, 2013, 84 (11)
[24]   Zernike phase contrast cryo-electron tomography of whole bacterial cells [J].
Guerrero-Ferreira, Ricardo C. ;
Wright, Elizabeth R. .
JOURNAL OF STRUCTURAL BIOLOGY, 2014, 185 (01) :129-133
[25]   Zernike phase contrast cryo-electron tomography of sodium-driven flagellar hook-basal bodies from Vibrio alginolyticus [J].
Hosogi, Naoki ;
Shigematsu, Hideki ;
Terashima, Hiroyuki ;
Homma, Michio ;
Nagayama, Kuniaki .
JOURNAL OF STRUCTURAL BIOLOGY, 2011, 173 (01) :67-76
[26]   Cryo-EM structure of haemoglobin at 3.2 Å determined with the Volta phase plate [J].
Khoshouei, Maryam ;
Radjainia, Mazdak ;
Baumeister, Wolfgang ;
Danev, Radostin .
NATURE COMMUNICATIONS, 2017, 8
[27]   Volta phase plate cryo-EM of the small protein complex Prx3 [J].
Khoshouei, Maryam ;
Radjainia, Mazdak ;
Phillips, Amy J. ;
Gerrard, Juliet A. ;
Mitra, Alok K. ;
Plitzko, Juergen M. ;
Baumeister, Wolfgang ;
Danev, Radostin .
NATURE COMMUNICATIONS, 2016, 7
[28]   Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 [J].
Kimanius, Dari ;
Forsberg, Bjorn O. ;
Scheres, Sjors H. W. ;
Lindahl, Erik .
ELIFE, 2016, 5
[29]   SOLVING THE STRUCTURE OF HUMAN H-FERRITIN BY GENETICALLY ENGINEERING INTERMOLECULAR CRYSTAL CONTACTS [J].
LAWSON, DM ;
ARTYMIUK, PJ ;
YEWDALL, SJ ;
SMITH, JMA ;
LIVINGSTONE, JC ;
TREFFRY, A ;
LUZZAGO, A ;
LEVI, S ;
AROSIO, P ;
CESARENI, G ;
THOMAS, CD ;
SHAW, WV ;
HARRISON, PM .
NATURE, 1991, 349 (6309) :541-544
[30]   Automated acquisition of cryo-electron micrographs for single particle reconstruction on an FEI Tecnai electron microscope [J].
Lei, JL ;
Frank, J .
JOURNAL OF STRUCTURAL BIOLOGY, 2005, 150 (01) :69-80