Identification and characterization of human PCDH10 gene promoter

被引:20
作者
Li, Zesong [1 ]
Xie, Jun [1 ]
Li, Wenjie [1 ]
Tang, Aifa [1 ]
Li, Xianxin [1 ]
Jiang, Zhimao [1 ]
Han, Yonghua [1 ]
Ye, Jiongxian [1 ]
Jing, Jie [2 ]
Gui, Yaoting [1 ]
Cai, Zhiming [1 ,3 ]
机构
[1] Peking Univ Shenzhen Hosp, Shenzhen PKU HKUST Med Ctr, Guangdong Key Lab Male Reprod Med & Genet, Shenzhen 518036, Guangdong, Peoples R China
[2] Peking Univ, Peking Univ Hosp 1, Beijing 100034, Peoples R China
[3] Shenzhen Univ, Affiliated Hosp 1, Shenzhen Peoples Hosp 2, Shenzhen 518035, Peoples R China
基金
高等学校博士学科点专项科研基金; 中国国家自然科学基金;
关键词
TATA-less promoter; NF-Y; Sp1/Sp3; CAAT box; CANDIDATE TUMOR-SUPPRESSOR; CADHERIN SUPERFAMILY; TRANSCRIPTION FACTOR; NF-Y; PROTOCADHERIN FAMILY; SP1; EXPRESSION; BINDING; METHYLATION; CANCER;
D O I
10.1016/j.gene.2011.01.001
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Recent studies have suggested roles for PCDH10 as a novel tumor suppressor gene. In our previous work, we located the core promoter of PCDH10 to a 462-bp segment of 5'-flanking region characterized by a high GC content. Here we further identified and characterized the promoter for PCDH10. Transient transfection of PC3 and LNCaP cells with a series of deleted promoter constructs indicated that the minimal promoter region was between nucleotides - 144 and -99. This segment contained a CAAT box, a GT box, and a putative transcription factor binding site for AP-4. Mutational analysis identified that the CAAT box and GT box are necessary for promoter activity. Ectopic expression of NF-Ys increased reporter gene activity, whereas expression of a dominant-negative NF-YA decreased reporter gene activity. Co-transfection of Sp1/Sp3 expression plasmids enhanced reporter gene activity in a dose-dependent manner. Mithramycin A. an inhibitor of Sp-DNA interaction, reduced PCDH10 promoter activity. Electrophoretic mobility shift assays and chromatin immunoprecipitation demonstrated binding of transcription factors Sp1/Sp3 to the promoter region in vitro and in vivo. Our data show that Spl/Sp3 and CBF/NF-Y transcription factors play a crucial role in the basal expression of the human PCDH10 gene. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:49 / 56
页数:8
相关论文
共 43 条
[1]  
Angst BD, 2001, J CELL SCI, V114, P629
[2]   MITHRAMYCIN INHIBITS SP1 BINDING AND SELECTIVELY INHIBITS TRANSCRIPTIONAL ACTIVITY OF THE DIHYDROFOLATE-REDUCTASE GENE INVITRO AND INVIVO [J].
BLUME, SW ;
SNYDER, RC ;
RAY, R ;
THOMAS, S ;
KOLLER, CA ;
MILLER, DM .
JOURNAL OF CLINICAL INVESTIGATION, 1991, 88 (05) :1613-1621
[3]   Genome-wide analysis of mammalian promoter architecture and evolution [J].
Carninci, Piero ;
Sandelin, Albin ;
Lenhard, Boris ;
Katayama, Shintaro ;
Shimokawa, Kazuro ;
Ponjavic, Jasmina ;
Semple, Colin A. M. ;
Taylor, Martin S. ;
Engström, Par G. ;
Frith, Martin C. ;
Forrest, Alistair R. R. ;
Alkema, Wynand B. ;
Tan, Sin Lam ;
Plessy, Charles ;
Kodzius, Rimantas ;
Ravasi, Timothy ;
Kasukawa, Takeya ;
Fukuda, Shiro ;
Kanamori-Katayama, Mutsumi ;
Kitazume, Yayoi ;
Kawaji, Hideya ;
Kai, Chikatoshi ;
Nakamura, Mari ;
Konno, Hideaki ;
Nakano, Kenji ;
Mottagui-Tabar, Salim ;
Arner, Peter ;
Chesi, Alessandra ;
Gustincich, Stefano ;
Persichetti, Francesca ;
Suzuki, Harukazu ;
Grimmond, Sean M. ;
Wells, Christine A. ;
Orlando, Valerio ;
Wahlestedt, Claes ;
Liu, Edison T. ;
Harbers, Matthias ;
Kawai, Jun ;
Bajic, Vladimir B. ;
Hume, David A. ;
Hayashizaki, Yoshihide .
NATURE GENETICS, 2006, 38 (06) :626-635
[4]   Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer [J].
Cheung, H. H. ;
Lee, T. L. ;
Davis, A. J. ;
Taft, D. H. ;
Rennert, O. M. ;
Chan, W. Y. .
BRITISH JOURNAL OF CANCER, 2010, 102 (02) :419-427
[5]   Protocadherins [J].
Frank, M ;
Kemler, R .
CURRENT OPINION IN CELL BIOLOGY, 2002, 14 (05) :557-562
[6]   Requirement of a GT box (Sp1 site) and two Ets binding sites for vascular endothelial cadherin gene transcription [J].
Gory, S ;
Dalmon, J ;
Prandini, MH ;
Kortulewski, T ;
de Launoit, Y ;
Huber, P .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (12) :6750-6755
[7]  
Grabe Niels, 2002, In Silico Biology, V2, pS1
[8]   CLONING BY RECOGNITION SITE SCREENING OF 2 NOVEL GT BOX BINDING-PROTEINS - A FAMILY OF SP1 RELATED GENES [J].
HAGEN, G ;
MULLER, S ;
BEATO, M ;
SUSKE, G .
NUCLEIC ACIDS RESEARCH, 1992, 20 (21) :5519-5525
[9]   Conserved noncoding sequences are reliable guides to regulatory elements [J].
Hardison, RC .
TRENDS IN GENETICS, 2000, 16 (09) :369-372
[10]   The role and expression of the protocadherin-alpha clusters in the CNS [J].
Hirayama, Teruyoshi ;
Yagi, Takeshi .
CURRENT OPINION IN NEUROBIOLOGY, 2006, 16 (03) :336-342