Neobacillus massiliamazoniensis sp. nov., a new bacterial species isolated from stool sample of an inhabitant of the Amazon region

被引:1
作者
Mbaye, B. [1 ,2 ]
Alou, M. Tidjani [1 ,2 ]
Fadlane, A. [1 ,2 ]
Fregiere, L. [1 ,2 ]
Alibar, S. [1 ,2 ]
Million, M. [1 ,2 ]
Fenollar, F. [2 ,3 ]
Lo, C., I [2 ,3 ]
机构
[1] Aix Marseille Univ, MEPHI, AP HM, IRD, Marseille, France
[2] IHU Mediterranee Infect, Marseille, France
[3] Aix Marseille Univ, VITROME, SSA, AP HM,IRD, Marseille, France
关键词
Culturomics; genome; gut microbiota; Neobacillus massiliamazoniensis; taxonogenomics; ALGORITHM;
D O I
10.1016/j.nmni.2021.100900
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Using a culturomics approach, a strain was isolated, identified and characterised following the taxonogenomics concept. Neobacillus massiliamazoniensis sp. nov., strain LFIT (=CSURP1359) was isolated from human stool. The 16S rRNA gene sequence analysis of strain LFIT (accession number: LK021124) exhibits 98.32% similarity levels with Neobacillus bataviensis strain IDAIII5 (accession number: NR_036766.1), the phylogenetically closest related species with standing in nomenclature. The draft genome size of strain LFIT (accession number: CVRB00000000) is 4.6 Mbp with a G+C content of 34.1 mol%. Analysis of phylogenic tree, genomic analysis and phenotypic criteria described here sufficiently prove that this bacterium is different from previously known bacterial species with standing in nomenclature and represents a new Neobacillus species belonging to Firmicutes phylum. (C) 2021 Published by Elsevier Ltd.
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相关论文
共 22 条
[1]  
Atlas RM, 2011, Manual of clinical microbiology, P272
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   RETRACTED: Passive Filtration, Rapid Scanning Electron Microscopy, and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Treponema Culture and Identification from the Oral Cavity (Retracted Article) [J].
Belkacemi, Souad ;
Khalil, Jacques Bou ;
Ominami, Yusuke ;
Hisada, Akiko ;
Fontanini, Anthony ;
Caputo, Aurelia ;
Levasseur, Anthony ;
Lagier, Jean-Christophe ;
Khelaifia, Saber ;
Raoult, Didier .
JOURNAL OF CLINICAL MICROBIOLOGY, 2019, 57 (10)
[4]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[5]   Description of three new Peptoniphilus species cultured in the vaginal fluid of a woman diagnosed with bacterial vaginosis: Peptoniphilus pacaensis sp. nov., Peptoniphilus raoultii sp. nov., and Peptoniphilus vaginalis sp. nov. [J].
Diop, Khoudia ;
Diop, Awa ;
Michelle, Caroline ;
Richez, Magali ;
Rathored, Jaishriram ;
Bretelle, Florence ;
Fournier, Pierre-Edouard ;
Fenollar, Florence .
MICROBIOLOGYOPEN, 2019, 8 (03)
[6]   From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology [J].
Fournier, Pierre-Edouard ;
Lagier, Jean-Christophe ;
Dubourg, Gregory ;
Raoult, Didier .
ANAEROBE, 2015, 36 :73-78
[7]  
Lagier JC, 2016, NAT MICROBIOL, V1, DOI [10.1038/NMICROBIOL.2016.203, 10.1038/nmicrobiol.2016.203]
[8]   OrthoANI: An improved algorithm and software for calculating average nucleotide identity [J].
Lee, Imchang ;
Kim, Yeong Ouk ;
Park, Sang-Cheol ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :1100-1103
[9]   High-quality draft genome sequence and description of Haemophilus massiliensis sp nov. [J].
Lo, Cheikh Ibrahima ;
Sankar, Senthil Alias ;
Fall, Becaye ;
Sambe-Ba, Bissoume ;
Diawara, Silman ;
Gueye, Mamadou Wague ;
Mediannikov, Oleg ;
Blanc-Tailleur, Caroline ;
Wade, Boubacar ;
Raoult, Didier ;
Fournier, Pierre-Edouard ;
Fenollar, Florence .
STANDARDS IN GENOMIC SCIENCES, 2016, 11
[10]   SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler [J].
Luo, Ruibang ;
Liu, Binghang ;
Xie, Yinlong ;
Li, Zhenyu ;
Huang, Weihua ;
Yuan, Jianying ;
He, Guangzhu ;
Chen, Yanxiang ;
Pan, Qi ;
Liu, Yunjie ;
Tang, Jingbo ;
Wu, Gengxiong ;
Zhang, Hao ;
Shi, Yujian ;
Liu, Yong ;
Yu, Chang ;
Wang, Bo ;
Lu, Yao ;
Han, Changlei ;
Cheung, David W. ;
Yiu, Siu-Ming ;
Peng, Shaoliang ;
Zhu Xiaoqian ;
Liu, Guangming ;
Liao, Xiangke ;
Li, Yingrui ;
Yang, Huanming ;
Wang, Jian ;
Lam, Tak-Wah ;
Wang, Jun .
GIGASCIENCE, 2012, 1