Genomic approaches to diagnose rare bone disorders

被引:12
作者
Falardeau, Felix [1 ,2 ]
Camurri, Maria Vittoria [1 ]
Campeau, Philippe M. [1 ,3 ]
机构
[1] CHU St Justine, Res Ctr, Montreal, PQ, Canada
[2] Univ Sherbrooke, Div Mol & Cellular Biol, Dept Biol, Sherbrooke, PQ, Canada
[3] Univ Montreal, Div Med Genet, Dept Pediat, Montreal, PQ, Canada
关键词
Next-generation sequencing; Skeletal dysplasias; Molecular and clinical diagnosis; BIRTH PREVALENCE RATES; EHLERS-DANLOS-SYNDROME; SULFATE-TRANSPORTER; DNA METHYLATION; MUTATIONS; SKELETAL; DYSPLASIA; TARGET; CHONDRODYSPLASIA; ACHONDROPLASIA;
D O I
10.1016/j.bone.2016.07.020
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Skeletal dysplasias are Mendelian disorders witlia prevalence of approximatively 1 in every 5000 individuals and can usually be diagnosed based on clinical and radiological findings. However, given that some diseases can be caused by several different genes, and that some genes can cause a variety of different phenotypes, achieving a molecular diagnosis can be challenging. We review here different approaches, from single gene sequencing to genomic approaches using next-generation sequencing, to reach a molecular diagnosis for skeletal dysplasias. We will further describe the overall advantages and limitations of first, second and third-generation sequencing, including single gene sequencing, whole-exome and genome sequencing (WES and WGS), multiple gene panel sequencing and single molecule sequencing. We also provide a brief overview of potential future applications of emerging technologies. (C) 2016 Elsevier Inc All rights reserved.
引用
收藏
页码:5 / 14
页数:10
相关论文
共 96 条
[1]   Macular corneal dystrophy type I and type II are caused by distinct mutations in a new sulphotransferase gene [J].
Akama, TO ;
Nishida, K ;
Nakayama, J ;
Watanabe, H ;
Ozaki, K ;
Nakamura, T ;
Dota, A ;
Kawasaki, S ;
Inoue, Y ;
Maeda, N ;
Yamamoto, S ;
Fujiwara, T ;
Thonar, EJMA ;
Shimomura, Y ;
Kinoshita, S ;
Tanigami, A ;
Fukuda, MN .
NATURE GENETICS, 2000, 26 (02) :237-241
[2]   Cloning and expression of a proteoglycan UDP-galactose:β-xylose β1,4-galactosyltransferase I -: A seventh member of the human β4-galactosyltransferase gene family [J].
Almeida, R ;
Levery, SB ;
Mandel, U ;
Kresse, H ;
Schwientek, T ;
Bennett, EP ;
Clausen, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (37) :26165-26171
[3]  
[Anonymous], NEXT STEPS SEQUENCE
[4]  
[Anonymous], 2016, INTRO NEXT GENERATIO
[5]   Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis [J].
Aref-Eshghi, Erfan ;
Zhang, Yuhua ;
Liu, Ming ;
Harper, Patricia E. ;
Martin, Glynn ;
Furey, Andrew ;
Green, Roger ;
Sun, Guang ;
Rahman, Proton ;
Zhai, Guangju .
BMC MUSCULOSKELETAL DISORDERS, 2015, 16
[6]   Faulty Initiation of Proteoglycan Synthesis Causes Cardiac and Joint Defects [J].
Baasanjav, Sevjidmaa ;
Al-Gazali, Lihadh ;
Hashiguchi, Taishi ;
Mizumoto, Shuji ;
Fischer, Bjoern ;
Horn, Denise ;
Seelow, Dominik ;
Ali, Bassam R. ;
Aziz, Samir A. A. ;
Langer, Ruth ;
Saleh, Ahmed A. H. ;
Becker, Christian ;
Nuernberg, Gudrun ;
Cantagrel, Vincent ;
Gleeson, Joseph G. ;
Gomez, Delphine ;
Michel, Jean-Baptiste ;
Stricker, Sigmar ;
Lindner, Tom H. ;
Nuernberg, Peter ;
Sugahara, Kazuyuki ;
Mundlos, Stefan ;
Hoffmann, Katrin .
AMERICAN JOURNAL OF HUMAN GENETICS, 2011, 89 (01) :15-27
[7]  
Bae J.S., 2015, GENET MED
[8]   Is the DNA sequence the gold standard in genetic testing? Quality of molecular genetic tests assessed [J].
Bakker, E .
CLINICAL CHEMISTRY, 2006, 52 (04) :557-558
[9]   Signaling Pathways in Human Skeletal Dysplasias [J].
Baldridge, Dustin ;
Shchelochkov, Oleg ;
Kelley, Brian ;
Lee, Brendan .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 11, 2010, 11 :189-217
[10]   Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants [J].
Belkadi, Aziz ;
Bolze, Alexandre ;
Itan, Yuval ;
Cobat, Aurelie ;
Vincent, Quentin B. ;
Antipenko, Alexander ;
Shang, Lei ;
Boisson, Bertrand ;
Casanova, Jean-Laurent ;
Abel, Laurent .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (17) :5473-5478