Automated Bright Field Segmentation of Cells and Vacuoles Using Image Processing Technique

被引:9
作者
Chiang, Pei-Ju [1 ,2 ]
Wu, Shao-Ming [1 ,2 ]
Tseng, Min-Jen [3 ,4 ]
Huang, Pin-Jie [3 ,4 ]
机构
[1] Natl Chung Cheng Univ, Dept Mech Engn, 168,Sec 1,Univ Rd, Chiayi 62102, Taiwan
[2] Natl Chung Cheng Univ, Adv Inst Mfg High Tech Innovat, 168,Sec 1,Univ Rd, Chiayi 62102, Taiwan
[3] Natl Chung Cheng Univ, Dept Biomed Sci, Chiayi, Taiwan
[4] Natl Chung Cheng Univ, Inst Mol Biol, Chiayi, Taiwan
关键词
vacuole; vacuolization; automated detection; image processing; PHASE-BASED SEGMENTATION; MONITORING AUTOPHAGY; MICROSCOPY IMAGES; DEATH; CANCER; APOPTOSIS; ASSAYS;
D O I
10.1002/cyto.a.23595
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Understanding the mechanisms and other variants of programmed cell death will help provide deeper insight into various disease processes. Although complex procedures are required to distinguish each type of cell death, the formation of vacuoles is one of the important features in some process of cell death under different conditions. Thus, monitoring and counting the number of vacuoles and the ratio of cells with vacuoles is a commonly used method to indicate and quantify the efficacy of the therapy. Several studies have shown that image processing can provide a quick, convenient and precise mean of performing cell detection. Hence, this study uses an image processing technique to detect and quantify vacuolated cells without the need for dyes. The system both counts the number of vacuolated cells and determines the ratio of cells with vacuoles. The performance of the proposed image processing system was evaluated using 38 images. It has been shown that a strong correlation exists between the automated counts and the manual counts. Furthermore, the absolute percentage errors between automated counts and manual counts for cell detection and vacuolated cell detection using data pooled from all images are 3.61 and 3.33%, respectively. A user-friendly graphical user interface (GUI) is also developed and freely available for download, providing researchers in biomedicine with a more convenient instrument for vacuolization analysis. (C) 2018 International Society for Advancement of Cytometry
引用
收藏
页码:1004 / 1018
页数:15
相关论文
共 50 条
[1]   Advanced phase-based segmentation of multiple cells from brightfield microscopy images [J].
Ali, Rehan ;
Gooding, Mark ;
Christlieb, Martin ;
Brady, Michael .
2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4, 2008, :181-+
[2]   Phase-based segmentation of cells from brightfield microscopy [J].
Ali, Rehan ;
Gooding, Mark ;
Christlieb, Martin ;
Brady, Michael .
2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3, 2007, :57-+
[3]   Principles and Current Strategies for Targeting Autophagy for Cancer Treatment [J].
Amaravadi, Ravi K. ;
Lippincott-Schwartz, Jennifer ;
Yin, Xiao-Ming ;
Weiss, William A. ;
Takebe, Naoko ;
Timmer, William ;
DiPaola, Robert S. ;
Lotze, Michael T. ;
White, Eileen .
CLINICAL CANCER RESEARCH, 2011, 17 (04) :654-666
[4]   Autophagy: assays and artifacts [J].
Barth, Sandra ;
Glick, Danielle ;
Macleod, Kay F. .
JOURNAL OF PATHOLOGY, 2010, 221 (02) :117-124
[5]   Suppression of inhomogeneities in images of textured surfaces [J].
Beyerer, J ;
Leon, FP .
OPTICAL ENGINEERING, 1997, 36 (01) :85-93
[6]   MONITORING AUTOPHAGIC DEGRADATION OF P62/SQSTM1 [J].
Bjorkoy, Geir ;
Lamark, Trond ;
Pankiv, Serhiy ;
Overvatn, Aud ;
Brech, Andreas ;
Johansen, Terje .
METHODS IN ENZYMOLOGY: AUTOPHAGY IN MAMMALIAN SYSTEMS, VOL 452, PT B, 2009, 452 :181-197
[7]  
Bradbury L, 2010, 32 ANN INT C IEEE EM
[8]   Ophiobolin A induces paraptosis-like cell death in human glioblastoma cells by decreasing BKCa channel activity [J].
Bury, M. ;
Girault, A. ;
Megalizzi, V. ;
Spiegl-Kreinecker, S. ;
Mathieu, V. ;
Berger, W. ;
Evidente, A. ;
Kornienko, A. ;
Gailly, P. ;
Vandier, C. ;
Kiss, R. .
CELL DEATH & DISEASE, 2013, 4 :e561-e561
[9]   Check your cultures! A list of cross-contaminated or misidentified cell lines [J].
Capes-Davis, Amanda ;
Theodosopoulos, George ;
Atkin, Isobel ;
Drexler, Hans G. ;
Kohara, Arihiro ;
MacLeod, Roderick A. F. ;
Masters, John R. ;
Nakamura, Yukio ;
Reid, Yvonne A. ;
Reddel, Roger R. ;
Freshney, R. Ian .
INTERNATIONAL JOURNAL OF CANCER, 2010, 127 (01) :1-8
[10]   CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)