Detection and Segmentation of Cell Nuclei in Virtual Microscopy Images: A Minimum-Model Approach

被引:162
作者
Wienert, Stephan [1 ,2 ]
Heim, Daniel [2 ]
Saeger, Kai [2 ]
Stenzinger, Albrecht [3 ]
Beil, Michael [4 ]
Hufnagl, Peter [1 ]
Dietel, Manfred [1 ]
Denkert, Carsten [1 ]
Klauschen, Frederick [1 ]
机构
[1] Charite, Inst Pathol, D-10117 Berlin, Germany
[2] VMscope GmbH, D-10117 Berlin, Germany
[3] Univ Heidelberg Hosp, Inst Pathol, D-69120 Heidelberg, Germany
[4] Univ Ulm, Dept Med 1, D-89081 Ulm, Germany
关键词
BREAST-CANCER; BIOMARKER VALIDATION; HISTOPATHOLOGY; QUANTIFICATION; TISSUE;
D O I
10.1038/srep00503
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Automated image analysis of cells and tissues has been an active research field in medical informatics for decades but has recently attracted increased attention due to developments in computer and microscopy hardware and the awareness that scientific and diagnostic pathology require novel approaches to perform objective quantitative analyses of cellular and tissue specimens. Model-based approaches use a priori information on cell shape features to obtain the segmentation, which may introduce a bias favouring the detection of cell nuclei only with certain properties. In this study we present a novel contour-based "minimum-model" cell detection and segmentation approach that uses minimal a priori information and detects contours independent of their shape. This approach avoids a segmentation bias with respect to shape features and allows for an accurate segmentation (precision=0.908; recall=0.859; validation based on similar to 8000 manually-labeled cells) of a broad spectrum of normal and disease-related morphological features without the requirement of prior training.
引用
收藏
页数:7
相关论文
共 39 条
[1]   Cell-based quantification of molecular biomarkers in histopathology specimens [J].
Al-Kofahi, Yousef ;
Lassoued, Wiem ;
Grama, Kedar ;
Nath, Sumit K. ;
Zhu, Jianliang ;
Oueslati, Ridha ;
Feldman, Michael ;
Lee, William M. F. ;
Roysam, Badrinath .
HISTOPATHOLOGY, 2011, 59 (01) :40-54
[2]   Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images [J].
Al-Kofahi, Yousef ;
Lassoued, Wiem ;
Lee, William ;
Roysam, Badrinath .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2010, 57 (04) :841-852
[3]   Unsupervised cell nucleus segmentation with active contours [J].
Bamford, P ;
Lovell, B .
SIGNAL PROCESSING, 1998, 71 (02) :203-213
[4]  
Bartels PH, 1997, INT J IMAG SYST TECH, V8, P214, DOI 10.1002/(SICI)1098-1098(1997)8:2<214::AID-IMA8>3.0.CO
[5]  
2-D
[6]  
BENGTSSON E, 1987, ANAL QUANT CYTOL, V9, P212
[7]  
Bibbo M, 1984, Monogr Clin Cytol, V9, P62
[8]   DISTANCE TRANSFORMATIONS IN DIGITAL IMAGES [J].
BORGEFORS, G .
COMPUTER VISION GRAPHICS AND IMAGE PROCESSING, 1986, 34 (03) :344-371
[9]   Histopathology Tissue Segmentation by Combining Fuzzy Clustering with Multiphase Vector Level Sets [J].
Bunyak, Filiz ;
Hafiane, Adel ;
Palaniappan, Kannappan .
SOFTWARE TOOLS AND ALGORITHMS FOR BIOLOGICAL SYSTEMS, 2011, 696 :413-424
[10]  
Eddy W. F., 1977, ACM Transactions on Mathematical Software, V3, P398, DOI 10.1145/355759.355766