Development of reverse transcription loop-mediated isothermal amplification for rapid detection of porcine epidemic diarrhea virus

被引:48
作者
Ren, Xiaofeng [1 ]
Li, Pengchong [1 ]
机构
[1] NE Agr Univ, Coll Vet Med, Dept Vet Prevent Med, Harbin 150030, Peoples R China
关键词
Porcine epidemic diarrhea virus; RT-LAMP; RT-PCR; TRANSMISSIBLE GASTROENTERITIS VIRUS; IN-SITU HYBRIDIZATION; POLYMERASE CHAIN-REACTION; NUCLEOCAPSID PROTEIN; DIFFERENTIAL DETECTION; STRUCTURAL PROTEINS; HUMAN CORONAVIRUS; MEMBRANE-PROTEIN; RT-PCR; INFECTION;
D O I
10.1007/s11262-011-0570-3
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this study, a reverse transcription loop-mediated isothermal amplification (RT-LAMP) was developed for detection of porcine epidemic diarrhea virus (PEDV). Six primers were designed to amplify the nucleocapsid (N) gene of PEDV. The optimization, sensitivity, and specificity of the RT-LAMP were investigated. The results showed that the optimal reaction condition for RT-LAMP amplifying PEDV N gene was achieved at 63A degrees C for 50 min. The RT-LAMP assay was more sensitive than gel-based RT-PCR and enzyme-linked immunosorbent assay. It was capable of detecting PEDV from clinical samples and differentiating PEDV from Porcine transmissible gastroenteritis virus, Porcine rotavirus, Porcine pseudorabies virus, Porcine reproductive and respiratory syndrome virus, and Avian infectious bronchitis virus.
引用
收藏
页码:229 / 235
页数:7
相关论文
共 35 条
  • [1] Cooperation between transmissible gastroenteritis coronavirus (TGEV) structural proteins in the in vitro induction of virus-specific antibodies
    Anton, IM
    Gonzalez, S
    Bullido, MJ
    Corsin, M
    Risco, C
    Langeveld, JPM
    Enjuanes, L
    [J]. VIRUS RESEARCH, 1996, 46 (1-2) : 111 - 124
  • [2] SEQUENCE DETERMINATION OF THE NUCLEOCAPSID PROTEIN GENE OF THE PORCINE EPIDEMIC DIARRHEA VIRUS CONFIRMS THAT THIS VIRUS IS A CORONAVIRUS RELATED TO HUMAN CORONAVIRUS-229E AND PORCINE TRANSMISSIBLE GASTROENTERITIS VIRUS
    BRIDGEN, A
    DUARTE, M
    TOBLER, K
    LAUDE, H
    ACKERMANN, M
    [J]. JOURNAL OF GENERAL VIROLOGY, 1993, 74 : 1795 - 1804
  • [3] Cavanagh D, 1997, ARCH VIROL, V142, P629
  • [4] Prevalence of porcine epidemic diarrhoea virus and transmissible gastroenteritis virus infection in Korean pigs
    Chae, C
    Kim, O
    Choi, C
    Min, K
    Cho, WS
    Kim, J
    Tai, JH
    [J]. VETERINARY RECORD, 2000, 147 (21) : 606 - 608
  • [5] Molecular characterization and phylogenetic analysis of membrane protein genes of porcine epidemic diarrhea virus isolates in China
    Chen, Jian-Fei
    Sun, Dong-Bo
    Wang, Cheng-Bao
    Shi, Hong-Yan
    Cui, Xiao-Chen
    Liu, Sheng-Wang
    Qiu, Hua-Ji
    Feng, Li
    [J]. VIRUS GENES, 2008, 36 (02) : 355 - 364
  • [6] Coronavirus particle assembly: Primary structure requirements of the membrane protein
    de Haan, CAM
    Kuo, L
    Masters, PS
    Vennema, H
    Rottier, PJM
    [J]. JOURNAL OF VIROLOGY, 1998, 72 (08) : 6838 - 6850
  • [7] DEBOUCK P, 1980, AM J VET RES, V41, P219
  • [8] SEQUENCE OF THE SPIKE PROTEIN OF THE PORCINE EPIDEMIC DIARRHEA VIRUS
    DUARTE, M
    LAUDE, H
    [J]. JOURNAL OF GENERAL VIROLOGY, 1994, 75 : 1195 - 1200
  • [9] Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus
    Dukes, J. P.
    King, D. P.
    Alexandersen, S.
    [J]. ARCHIVES OF VIROLOGY, 2006, 151 (06) : 1093 - 1106
  • [10] EGBERINK HF, 1988, AM J VET RES, V49, P1320