Genome sequence of Kobresia littledalei, the first chromosome-level genome in the family Cyperaceae

被引:34
|
作者
Can, Muyou [1 ,2 ]
Wei, Wei [1 ,2 ]
Zi, Hailing [3 ]
Bai, Magaweng [1 ,2 ]
Liu, Yunfei [1 ,2 ]
Gao, Dan [3 ]
Tu, Dengqunpei [1 ,2 ]
Bao, Yuhong [1 ,2 ]
Wang, Li [1 ,2 ]
Chen, Shaofeng [1 ,2 ]
Zhao, Xing [3 ]
Qu, Guangpeng [1 ,2 ]
机构
[1] State Key Lab Hulless Barley & Yak Germplasm Reso, Lhasa 850000, Peoples R China
[2] Tibet Acad Agr & Anim Husb Sci, Inst Grassland Sci, Lhasa 850000, Peoples R China
[3] Novogene Bioinformat Inst, Beijing 100083, Peoples R China
关键词
PREDICTION; FINDER;
D O I
10.1038/s41597-020-0518-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Kobresiaplants are important forage resources in the Qinghai-Tibet Plateau and are essential in maintaining the ecological balance of grasslands. Therefore, it is beneficial to obtainKobresiagenome resources and study the adaptive characteristics ofKobresiaplants in the Qinghai-Tibetan Plateau. We assembled the genome ofKobresia littledaleiC. B. Clarke, which was about 373.85 Mb in size. 96.82% of the bases were attached to 29 pseudo-chromosomes, combining PacBio, Illumina and Hi-C sequencing data. Additional investigation of the annotation identified 23,136 protein-coding genes. 98.95% of these were functionally annotated. According to phylogenetic analysis, K. littledaleiin Cyperaceae separated from Poaceae about 97.6 million years ago after separating fromAnanas comosusin Bromeliaceae about 114.3mya. ForK. littledalei, we identified a high-quality genome at the chromosome level. This is the first time a reference genome has been established for a species of Cyperaceae. This genome will help additional studies focusing on the processes of plant adaptation to environments with high altitude and cold weather.
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页数:8
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