Complete genome sequence analysis of dengue virus type 2 isolated in Brunei

被引:11
作者
Osman, Osmali [1 ]
Fong, Mun Yik [2 ]
Devi, Shamala [1 ]
机构
[1] Univ Malaya, Fac Med, Dept Med Microbiol, Kuala Lumpur, Malaysia
[2] Univ Malaya, Dept Parasitol, Fac Med, Kuala Lumpur 50603, Malaysia
关键词
dengue virus type 2; sequencing phylogenetic analysis; complete genome; Brunei;
D O I
10.1016/j.virusres.2008.02.006
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
In a previous study, we have reported the detection and isolation of dengue virus in Brunei (Osman, O., Fong, M.Y., Devi, S., 2007. A preliminary study of dengue infection in Brunei. JJID 60 (4), 205-208). DEN-2 was the predominant serotype followed by DEN-1. The full genomic sequences of 3 DEN-2 viruses isolated during the 2005-2006 dengue incident in Brunei were determined. Twenty-five primer sets were designed to amplify contiguous overlapping fragments of approximately 500-600 base pairs spanning the entire sequence of the viral genome. The amplified PCR products were sent for sequencing and their nucleoticles and the deduced amino acids were determined. All three DEN-2 virus isolated were clustered in the Cosmopolitan genotype of the DEN-2 classification by Twiddy et al. This work constitutes the first complete genetic characterization of three Brunei DEN-2 virus strains. (c) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:48 / 52
页数:5
相关论文
共 24 条
[1]   NS-1 GENE-SEQUENCES FROM 8 DENGUE-2 VIRUSES AND THEIR EVOLUTIONARY RELATIONSHIPS WITH OTHER DENGUE-2 VIRUSES [J].
BLOK, J ;
GIBBS, AJ ;
MCWILLIAM, SM ;
VITARANA, UT .
ARCHIVES OF VIROLOGY, 1991, 118 (3-4) :209-223
[2]   MOLECULAR EPIDEMIOLOGY OF DENGUE-1 AND DENGUE-4 VIRUSES [J].
CHUNGUE, E ;
CASSAR, O ;
DROUET, MT ;
GUZMAN, MG ;
LAILLE, M ;
ROSEN, L ;
DEUBEL, V .
JOURNAL OF GENERAL VIROLOGY, 1995, 76 :1877-1884
[3]   DIRECT SEQUENCING OF GENOMIC CDNA FRAGMENTS AMPLIFIED BY THE POLYMERASE CHAIN-REACTION FOR MOLECULAR EPIDEMIOLOGY OF DENGUE-2 VIRUSES [J].
DEUBEL, V ;
NOGUEIRA, RM ;
DROUET, MT ;
ZELLER, H ;
REYNES, JM ;
HA, DQ .
ARCHIVES OF VIROLOGY, 1993, 129 (1-4) :197-210
[4]   Dengue: an escalating problem [J].
Gibbons, RV ;
Vaughn, DW .
BMJ-BRITISH MEDICAL JOURNAL, 2002, 324 (7353) :1563-1566
[5]  
Gubler D. J., 1998, Annals Academy of Medicine Singapore, V27, P227
[6]  
GUBLER DJ, 1995, EMERG INFECT DIS, V1, P55
[7]   Dengue and dengue hemorrhagic fever [J].
Gubler, DJ .
CLINICAL MICROBIOLOGY REVIEWS, 1998, 11 (03) :480-+
[8]  
IGARASHI A, 1982, ICMR ANN KOBE U, V2, P7
[9]   Rapid detection serotyping and quantitation of dengue viruses by TaqMan real-time one-step RT-PCR [J].
Kong, Yong Yean ;
Thay, Chong Heng ;
Tin, Tan Chong ;
Devi, Shamala .
JOURNAL OF VIROLOGICAL METHODS, 2006, 138 (1-2) :123-130
[10]   MOLECULAR EVOLUTION AND EPIDEMIOLOGY OF DENGUE-3 VIRUSES [J].
LANCIOTTI, RS ;
LEWIS, JG ;
GUBLER, DJ ;
TRENT, DW .
JOURNAL OF GENERAL VIROLOGY, 1994, 75 :65-75