Flavobacterium tyrosinilyticum sp nov., isolated from the rhizosphere of wild strawberry

被引:10
作者
Du, Juan [1 ]
Yi, Tae-Hoo [1 ]
机构
[1] Kyung Hee Univ, Dept Oriental Med Mat & Proc, Coll Life Sci, Global Campus,1732 Deokyoungdae Ro, Yongin 446701, Gyeonggi Do, South Korea
关键词
EMENDED DESCRIPTION; DEOXYRIBONUCLEIC-ACID; GENUS FLAVOBACTERIUM; FRESH-WATER; SOIL; CLASSIFICATION; CAUENSE;
D O I
10.1099/ijsem.0.001104
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, facultatively anaerobic, motile and rod-shaped bacterial strain, designated THG-DN8.8(T), was isolated from the rhizosphere of a wild strawberry plant, located on Gyeryong Mountain, Daejeon, Republic of Korea. According to 16S rRNA gene sequence comparisons, the isolate was identified as a member of the genus Flavobacterium and was related most closely to Flavobacterium banpakuense 15F3(T) (97.7% sequence similarity), Flavobacterium ginsenosidimutans THG-01(T)(97.3%), Flavobacterium ginsengiterrae DCY55(T) (96.9%) and Flavobacterium chungbukense CS100(T) (96.7%). Catalase and oxidase tests were positive. Levels of DNA-DNA relatedness with its phylogenetically closest neighbours were below 40.0%. The DNA G+C content was determined to be 39.1 mol%. Strain THG-DN8.8(T) also was found to be able to grow at 4-33 degrees C, with 0-2 % (w/v) NaCl and at pH 5.5-9.5. The major fatty acids were iso-C-15:0, summed feature 3 (comprising C-16:1 omega 7c and/or C-16:1 omega 6c) and C-16:0. Menaquinone-6 (MK-6) was the dominant respiratory quinone, and phosphatidylethanolamine and phosphatidyldiethanolamine were the main polar lipids. On the basis of the data presented, strain THG-DN8.8(T) represents a novel species, for which the name Flavobacterium tyrosinilyticum sp. nov. is proposed. The type strain is THG-DN8.8(T) (=KCTC 42726(T)=CCTCC AB 2015295(T)).
引用
收藏
页码:2629 / 2634
页数:6
相关论文
共 35 条
[11]   Flavobacterium anatoliense sp nov., isolated from fresh water, and emended description of Flavobacterium ceti [J].
Kacagan, Murat ;
Inan, Kadriye ;
Belduz, Ali Osman ;
Canakci, Sabriye .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :2075-2081
[12]   Flavobacterium chilense sp nov and Flavobacterium araucananum sp nov., isolated from farmed salmonid fish [J].
Kaempfer, P. ;
Lodders, N. ;
Martin, K. ;
Avendano-Herrera, R. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :1402-1408
[13]   Flavobacterium banpakuense sp nov., isolated from leaf-and-branch compost [J].
Kim, Joong-Jae ;
Jin, Hyun Mi ;
Lee, Hyo Jung ;
Jeon, Che Ok ;
Kanaya, Eiko ;
Koga, Yuichi ;
Takano, Kazufumi ;
Kanaya, Shigenori .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :1595-1600
[14]   Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species [J].
Kim, Ok-Sun ;
Cho, Yong-Joon ;
Lee, Kihyun ;
Yoon, Seok-Hwan ;
Kim, Mincheol ;
Na, Hyunsoo ;
Park, Sang-Cheol ;
Jeon, Yoon Seong ;
Lee, Jae-Hak ;
Yi, Hana ;
Won, Sungho ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :716-721
[15]   Flavobacterium ginsengiterrae sp nov., isolated from a ginseng field [J].
Kim, Sang-Rae ;
Kim, Yeon-Ju ;
Nguyen, Ngoc-Lan ;
Min, Jin-Woo ;
Jeon, Ji-Na ;
Yang, Dong-Uk ;
Yang, Deok-Chun .
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2011, 57 (06) :341-346
[16]   Flavobacterium ginsengisoli sp nov., isolated from soil of a ginseng field [J].
Kim, Yeon-Ju ;
Kim, Sang-Rae ;
Ngoc-Lan Nguyen ;
Yang, Deok-Chun .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :4289-4293
[17]  
Kimura M., 1983, NEUTRAL THEORY MOL E
[18]   Flavobacterium akiainvivens sp nov., from decaying wood of Wikstroemia oahuensis, Hawai'i, and emended description of the genus Flavobacterium [J].
Kuo, Iris ;
Saw, Jimmy ;
Kapan, Durrell D. ;
Christensen, Stephanie ;
Kaneshiro, Kenneth Y. ;
Donachie, Stuart P. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :3280-3286
[19]   Flavobacterium chungbukense sp nov., isolated from soil [J].
Lim, Chae-Sung ;
Oh, Yong-Sik ;
Lee, Jae-Kwan ;
Park, A-Rum ;
Yoo, Jae-Soo ;
Rhee, Sung-Keun ;
Roh, Dong-Hyun .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :2734-2739
[20]   Flavobacterium anhuiense sp nov., isolated from field soil [J].
Liu, Huan ;
Liu, Rui ;
Yang, Shou-Yun ;
Gao, Wei-Kai ;
Zhang, Chong-Xing ;
Zhang, Ke-Yun ;
Lai, Ren .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :756-760