Flavobacterium tyrosinilyticum sp nov., isolated from the rhizosphere of wild strawberry

被引:10
作者
Du, Juan [1 ]
Yi, Tae-Hoo [1 ]
机构
[1] Kyung Hee Univ, Dept Oriental Med Mat & Proc, Coll Life Sci, Global Campus,1732 Deokyoungdae Ro, Yongin 446701, Gyeonggi Do, South Korea
关键词
EMENDED DESCRIPTION; DEOXYRIBONUCLEIC-ACID; GENUS FLAVOBACTERIUM; FRESH-WATER; SOIL; CLASSIFICATION; CAUENSE;
D O I
10.1099/ijsem.0.001104
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, facultatively anaerobic, motile and rod-shaped bacterial strain, designated THG-DN8.8(T), was isolated from the rhizosphere of a wild strawberry plant, located on Gyeryong Mountain, Daejeon, Republic of Korea. According to 16S rRNA gene sequence comparisons, the isolate was identified as a member of the genus Flavobacterium and was related most closely to Flavobacterium banpakuense 15F3(T) (97.7% sequence similarity), Flavobacterium ginsenosidimutans THG-01(T)(97.3%), Flavobacterium ginsengiterrae DCY55(T) (96.9%) and Flavobacterium chungbukense CS100(T) (96.7%). Catalase and oxidase tests were positive. Levels of DNA-DNA relatedness with its phylogenetically closest neighbours were below 40.0%. The DNA G+C content was determined to be 39.1 mol%. Strain THG-DN8.8(T) also was found to be able to grow at 4-33 degrees C, with 0-2 % (w/v) NaCl and at pH 5.5-9.5. The major fatty acids were iso-C-15:0, summed feature 3 (comprising C-16:1 omega 7c and/or C-16:1 omega 6c) and C-16:0. Menaquinone-6 (MK-6) was the dominant respiratory quinone, and phosphatidylethanolamine and phosphatidyldiethanolamine were the main polar lipids. On the basis of the data presented, strain THG-DN8.8(T) represents a novel species, for which the name Flavobacterium tyrosinilyticum sp. nov. is proposed. The type strain is THG-DN8.8(T) (=KCTC 42726(T)=CCTCC AB 2015295(T)).
引用
收藏
页码:2629 / 2634
页数:6
相关论文
共 35 条
[1]  
Bergey DH, 1923, Bergey's Manual of Determinative Bacteriology, P97
[2]   Cutting a gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom nov (basonym, Cytophaga aquatilis Strohl and Tait 1978) [J].
Bernardet, JF ;
Segers, P ;
Vancanneyt, M ;
Berthe, F ;
Kersters, K ;
Vandamme, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (01) :128-148
[3]   DISTRIBUTION OF ISOPRENOID QUINONE STRUCTURAL TYPES IN BACTERIA AND THEIR TAXONOMIC IMPLICATIONS [J].
COLLINS, MD ;
JONES, D .
MICROBIOLOGICAL REVIEWS, 1981, 45 (02) :316-354
[4]   Flavobacterium enshiense sp nov., isolated from soil, and emended descriptions of the genus Flavobacterium and Flavobacterium cauense, Flavobacterium saliperosum and Flavobacterium suncheonense [J].
Dong, Kun ;
Chen, Fang ;
Du, Yan ;
Wang, Gejiao .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :886-892
[5]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[6]  
FAUTZ E, 1980, FEMS MICROBIOL LETT, V8, P87, DOI 10.1111/j.1574-6968.1980.tb05056.x
[7]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[8]   Flavobacterium beibuense sp. nov., isolated from marine sediment [J].
Fu, Yuanyuan ;
Tang, Xixiang ;
Lai, Qiliang ;
Zhang, Chunhua ;
Zhong, Huanzi ;
Li, Weiwei ;
Liu, Yuhui ;
Chen, Liang ;
Sun, Fengqin ;
Shao, Zongze .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :205-209
[9]  
Hall T.A., 1999, IOC world bird list (version 11.1), DOI [10.1021/bk-1999-0734.ch008, DOI 10.14344/IOC.ML.11.1, DOI 10.1021/BK-1999-0734.CH008]
[10]   Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection [J].
Hiraishi, A ;
Ueda, Y ;
Ishihara, J ;
Mori, T .
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 1996, 42 (06) :457-469