Age-related changes in the gut microbiota of wild House Sparrow nestlings

被引:43
作者
Kohl, Kevin D. [1 ,2 ]
Brun, Antonio [3 ]
Caviedes-Vidal, Enrique [4 ,5 ]
Karasov, William H. [3 ]
机构
[1] Vanderbilt Univ, Dept Biol Sci, 465 21st Ave South, Nashville, TN 37235 USA
[2] Univ Pittsburgh, Dept Biol Sci, 4249 Fifth Ave, Pittsburgh, PA 15260 USA
[3] Univ Wisconsin, Dept Forest & Wildlife Ecol, 1630 Linden Dr, Madison, WI 53706 USA
[4] Consejo Nacl Invest Cient & Tecn, Inst Multidisciplinario Invest Biol San Luis, Lab Biol Integrat, RA-5700 San Luis, Argentina
[5] Univ Nacl San Luis, Dept Bioquim & Ciencias Biol, Chacabuco 917, RA-5700 San Luis, Argentina
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
avian; bird; host-microbe interactions; microbiome; Passer domesticus; PASSER-DOMESTICUS; EVOLUTION; COMMUNITIES; ZEBRAFISH; DIVERSITY; PROFILES; LIFE;
D O I
10.1111/ibi.12618
中图分类号
Q95 [动物学];
学科分类号
071002 ;
摘要
Here, we document the development of the House Sparrow Passer domesticus gut microbiota for the benefit of future ecological and evolutionary studies in this widely used avian system. We collected and inventoried luminal and mucosal samples from the distal guts of nestling House Sparrows between 3 and 12 days of age, and also collected similar samples from adult birds. Luminal bacterial community membership and structure differed significantly between nestlings and adults. The relative abundance of Proteobacteria in the lumen decreased around day 9, whereas the relative abundance of Firmicutes increased, demonstrating age-related changes in the microbiota of House Sparrows.
引用
收藏
页码:184 / 191
页数:8
相关论文
共 45 条
[1]  
Anderson T., 2006, BIOL UBIQUITOUS HOUS, DOI DOI 10.1093/ACPROF:OSO/9780195304114.001.0001
[2]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[3]   Sporomusa aerivorans sp nov., an oxygen-reducing homoacetogenic bacterium from the gut of a soil-feeding termite [J].
Boga, HI ;
Ludwig, W ;
Brune, A .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 :1397-1404
[4]  
Brown C.R., 1999, BIRDS N AM
[5]   Developmental adjustments of house sparrow (Passer domesticus) nestlings to diet composition [J].
Brzek, Pawel ;
Kohl, Kevin ;
Caviedes-Vidal, Enrique ;
Karasov, William H. .
JOURNAL OF EXPERIMENTAL BIOLOGY, 2009, 212 (09) :1284-1293
[6]   Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development [J].
Burns, Adam R. ;
Stephens, W. Zac ;
Stagaman, Keaton ;
Wong, Sandi ;
Rawls, John F. ;
Guillemin, Karen ;
Bohannan, Brendan J. M. .
ISME JOURNAL, 2016, 10 (03) :655-664
[7]   Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms [J].
Caporaso, J. Gregory ;
Lauber, Christian L. ;
Walters, William A. ;
Berg-Lyons, Donna ;
Huntley, James ;
Fierer, Noah ;
Owens, Sarah M. ;
Betley, Jason ;
Fraser, Louise ;
Bauer, Markus ;
Gormley, Niall ;
Gilbert, Jack A. ;
Smith, Geoff ;
Knight, Rob .
ISME JOURNAL, 2012, 6 (08) :1621-1624
[8]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[9]   PyNAST: a flexible tool for aligning sequences to a template alignment [J].
Caporaso, J. Gregory ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
DeSantis, Todd Z. ;
Andersen, Gary L. ;
Knight, Rob .
BIOINFORMATICS, 2010, 26 (02) :266-267
[10]   Developmental changes in digestive physiology of nestling house sparrows, Passer domesticus [J].
Caviedes-Vidal, E ;
Karasov, WH .
PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY, 2001, 74 (05) :769-782