Complete Genome Sequences of Bacteriocin-Producing Streptococcus thermophilus Strains ST106 and ST109

被引：0

作者：

Renye, John A., Jr. ^{[1
]}

Needleman, David S. ^{[2
]}

Steinberg, Dennis H. ^{[1
]}

机构：

[1] ARS, Dairy & Funct Foods Res Unit, USDA, Wyndmoor, PA 19038 USA

[2] ARS, Off Ctr Director, USDA, Wyndmoor, PA 19038 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 07期

关键词：

ASSEMBLIES; ANNOTATION;

D O I：

10.1128/MRA.01696-18

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Streptococcus therrnophitus strains ST106 and ST109 produce broadspectrum bacteriocins encoded within a bacteriocin-like peptide (b1p) gene cluster. This study reports the complete genome sequences for both strains, with the ST109 chromosome containing 1,788,866 nucleotides (nt) and 1,572 predicted genes, and ST106 having 1,856,083 nt and 1,601 predicted genes.

引用

页数：2

共 13 条

[1] Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus [J].

Bolotin, A ;

Quinquis, B ;

Renault, P ;

Sorokin, A ;

Ehrlich, SD ;

Kulakauskas, S ;

Lapidus, A ;

Goltsman, E ;

Mazur, M ;

Pusch, GD ;

Fonstein, M ;

Overbeek, R ;

Kyprides, N ;

Purnelle, B ;

Prozzi, D ;

Ngui, K ;

Masuy, D ;

Hancy, F ;

Burteau, S ;

Boutry, M ;

Delcour, J ;

Goffeau, A ;

Hols, P .

NATURE BIOTECHNOLOGY, 2004, 22 (12) :1554-1558

[2]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/nmeth.2474, 10.1038/NMETH.2474]

[3] Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide [J].

de Saizieu, A ;

Gardès, C ;

Flint, N ;

Wagner, C ;

Kamber, M ;

Mitchell, TJ ;

Keck, W ;

Amrein, KE ;

Lange, R .

JOURNAL OF BACTERIOLOGY, 2000, 182 (17) :4696-4703

[4] Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods [J].

Droege, J. ;

Gregor, I. ;

McHardy, A. C. .

BIOINFORMATICS, 2015, 31 (06) :817-824

[5] Quorum-sensing regulation of the production of blp bacteriocins in Streptococcus thermophilus [J].

Fontaine, Laetitia ;

Boutry, Celine ;

Guedon, Eric ;

Guillot, Alain ;

Ibrahim, Mariam ;

Grossiord, Benoit ;

Hols, Pascal .

JOURNAL OF BACTERIOLOGY, 2007, 189 (20) :7195-7205

[6] RefSeq: an update on prokaryotic genome annotation and curation [J].

Haft, Daniel H. ;

DiCuccio, Michael ;

Badretdin, Azat ;

Brover, Vyacheslav ;

Chetvernin, Vyacheslav ;

O'Neill, Kathleen ;

Li, Wenjun ;

Chitsaz, Farideh ;

Derbyshire, Myra K. ;

Gonzales, Noreen R. ;

Gwadz, Marc ;

Lu, Fu ;

Marchler, Gabriele H. ;

Song, James S. ;

Thanki, Narmada ;

Yamashita, Roxanne A. ;

Zheng, Chanjuan ;

Thibaud-Nissen, Francoise ;

Geer, Lewis Y. ;

Marchler-Bauer, Aron ;

Pruitt, Kim D. .

NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D851-D860

[7] Circlator: automated circularization of genome assemblies using long sequencing reads [J].

Hunt, Martin ;

De Silva, Nishadi ;

Otto, Thomas D. ;

Parkhill, Julian ;

Keane, Jacqueline A. ;

Harris, Simon R. .

GENOME BIOLOGY, 2015, 16

[8] Bacteriocin production by Streptococcus thermophilus in complex growth media [J].

Renye, J. A., Jr. ;

Somkuti, G. A. ;

Garabal, J. I. ;

Steinberg, D. H. .

BIOTECHNOLOGY LETTERS, 2016, 38 (11) :1947-1954

[9]

Renye JA, 2017, GENOME ANNOUNCEMENTS, V5, DOI [10.1128/genomeA.01213-17, 10.1128/genomea.01213-17]

[10] BlpC-regulated bacteriocin production in Streptococcus thermophilus [J].

Renye, John A., Jr. ;

Somkuti, George A. .

BIOTECHNOLOGY LETTERS, 2013, 35 (03) :407-412

← 1 2 →