Base-calling for next-generation sequencing platforms

被引：97

作者：

Ledergerber, Christian ^{[1
,2
]}

Dessimoz, Christophe ^{[1
]}

机构：

[1] ETH, CBRG Grp, Zurich, Switzerland

[2] Harvard Univ, Pfister Lab Comp Vis, Cambridge, MA 02138 USA

来源：

BRIEFINGS IN BIOINFORMATICS | 2011年 / 12卷 / 05期

关键词：

Base-calling; next generation sequencing; deep sequencing; illumina; solexa; roche; 454; bustard; DNA; CALLER;

D O I：

10.1093/bib/bbq077

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Next-generation sequencing platforms are dramatically reducing the cost of DNA sequencing. With these technologies, bases are inferred from light intensity signals, a process commonly referred to as base-calling. Thus, understanding and improving the quality of sequence data generated using these approaches are of high interest. Recently, a number of papers have characterized the biases associated with base-calling and proposed methodological improvements. In this review, we summarize recent development of base-calling approaches for the Illumina and Roche 454 sequencing platforms.

引用

页码：489 / 497

页数：9

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