Crystal structure of dehydratase component HadAB complex of mycobacterial FAS-II pathway

被引:17
作者
Biswas, Rupam [1 ]
Dutta, Anirudha [1 ]
Dutta, Debajyoti [1 ]
Hazra, Ditipriya [1 ]
Banerjee, Deb Ranjan [2 ]
Basak, Amit [2 ]
Das, Amit Kumar [1 ]
机构
[1] Indian Inst Technol, Dept Biotechnol, Kharagpur 721302, W Bengal, India
[2] Indian Inst Technol, Dept Chem, Kharagpur, W Bengal, India
关键词
Mycolic acid; Double hot-dog fold; Dehydratase; Mycobacterium tuberculosis; CARRIER PROTEIN DEHYDRATASE; FATTY-ACID BIOSYNTHESIS; ENOYL-COA HYDRATASE; POLYHYDROXYALKANOATE BIOSYNTHESIS; PSEUDOMONAS-AERUGINOSA; AEROMONAS-CAVIAE; SYNTHASE SYSTEM; ACTIVE-SITE; TUBERCULOSIS; SUPERFAMILY;
D O I
10.1016/j.bbrc.2015.01.119
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Fatty acid biosynthesis type II in mycobacteria delivers the fatty acids required for mycolic acid synthesis. The pathway employs a unique maoC like beta-hydroxyacyl-ACP dehydratase HadAB or HadBC heterodimer in the third step of the elongation cycle. Here we report the crystal structure of the HadAB complex determined using a Pb-SIRAS method. Crystal structure aided with enzymatic study establishes the roles of HadA as a scaffolding component and HadB as a catalytic component together indispensable for the activity. The detailed structural analysis of HadAB in combination with MD simulation endorses the spatial orientation of the central hot-dog helix and the dynamic nature of its associated loop in regulation of substrate specificities in dehydratase/hydratase family enzymes. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:369 / 374
页数:6
相关论文
共 31 条
[21]   Analysis of proteins with the 'hot dog' fold: Prediction of function and identification of catalytic residues of hypothetical proteins [J].
Pidugu, Lakshmi S. ;
Maity, Koustav ;
Ramaswamy, Karthikeyan ;
Surolia, Namita ;
Suguna, Kaza .
BMC STRUCTURAL BIOLOGY, 2009, 9
[22]   GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit [J].
Pronk, Sander ;
Pall, Szilard ;
Schulz, Roland ;
Larsson, Per ;
Bjelkmar, Par ;
Apostolov, Rossen ;
Shirts, Michael R. ;
Smith, Jeremy C. ;
Kasson, Peter M. ;
van der Spoel, David ;
Hess, Berk ;
Lindahl, Erik .
BIOINFORMATICS, 2013, 29 (07) :845-854
[23]   The missing piece of the type II fatty acid synthase system from Mycobacterium tuberculosis [J].
Sacco, Emmanuelle ;
Covarrubias, Adrian Suarez ;
O'Hare, Helen M. ;
Carroll, Paul ;
Eynard, Nathalie ;
Jones, T. Alwyn ;
Parish, Tanya ;
Daffe, Marnadou ;
Baeckbro, Kristina ;
Quemard, Annaik .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (37) :14628-14633
[24]   Revisiting the Assignment of Rv0241c to Fatty Acid Synthase Type II of Mycobacterium tuberculosis [J].
Sacco, Emmanuelle ;
Slama, Nawel ;
Backbro, Kristina ;
Parish, Tanya ;
Laval, Francoise ;
Daffe, Mamadou ;
Eynard, Nathalie ;
Quemard, Annaik .
JOURNAL OF BACTERIOLOGY, 2010, 192 (15) :4037-4044
[25]   A short history of SHELX [J].
Sheldrick, George M. .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2008, 64 :112-122
[26]   Negative regulation by Ser/Thr phosphorylation of HadAB and HadBC dehydratases from Mycobacterium tuberculosis type II fatty acid synthase system [J].
Slama, Nawel ;
Leiba, Jade ;
Eynard, Nathalie ;
Daffe, Mamadou ;
Kremer, Laurent ;
Quemard, Annaik ;
Molle, Virginie .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2011, 412 (03) :401-406
[27]   Pathway to synthesis and processing of mycolic acids in Mycobacterium tuberculosis [J].
Takayama, K ;
Wang, C ;
Besra, GS .
CLINICAL MICROBIOLOGY REVIEWS, 2005, 18 (01) :81-+
[28]  
Vonrhein Clemens, 2007, Methods Mol Biol, V364, P215, DOI 10.1385/1-59745-266-1:215
[29]   Structure Reveals Regulatory Mechanisms of a MaoC-Like Hydratase from Phytophthora capsici Involved in Biosynthesis of Polyhydroxyalkanoates (PHAs) [J].
Wang, Huizheng ;
Zhang, Kai ;
Zhu, Jie ;
Song, Weiwei ;
Zhao, Li ;
Zhang, Xiuguo .
PLOS ONE, 2013, 8 (11)
[30]   The structural biology of type II fatty acid biosynthesis [J].
White, SW ;
Zheng, J ;
Zhang, YM ;
Rock, CO .
ANNUAL REVIEW OF BIOCHEMISTRY, 2005, 74 :791-831