The AlkB Domain of Mammalian ABH8 Catalyzes Hydroxylation of 5-Methoxycarbonylmethyluridine at the Wobble Position of tRNA

被引:125
作者
Fu, Ye [3 ]
Dai, Qing [1 ]
Zhang, Wen [3 ]
Ren, Jin [3 ]
Pan, Tao [1 ,2 ]
He, Chuan [2 ,3 ]
机构
[1] Univ Chicago, Dept Biochem & Mol Biol, Chicago, IL 60637 USA
[2] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA
[3] Univ Chicago, Dept Chem, Chicago, IL 60637 USA
关键词
enzyme models; hydroxylation; oxidoreductases; RNA structures; tRNA; OXIDATIVE DEMETHYLATION; DNA-DAMAGE; FTO GENE; ALKYLATION DAMAGE; METHYLTRANSFERASE; CONTRIBUTES; CHILDHOOD; REVERSAL; HOMOLOG; OBESITY;
D O I
10.1002/anie.201001242
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Family ties: The AlkB family of nonheme iron, α-ketoglutarate (αKG)-dependent dioxygenases is involved in biological processes such as DNA/RNA repair and obesity. The AlkB domain of ABH8 is shown to catalyze the hydroxylation of a modified uridine (mcm5U) into (S)-mchm 5U at the wobble position of the anticodon stem-loop in tRNA (see scheme), thereby suggesting that this protein is a tRNA hypermodification enzyme. © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:8885 / 8888
页数:4
相关论文
共 28 条
[1]   Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA [J].
Aas, PA ;
Otterlei, M ;
Falnes, PO ;
Vågbo, CB ;
Skorpen, F ;
Akbari, M ;
Sundheim, O ;
Bjorås, M ;
Slupphaug, G ;
Seeberg, E ;
Krokan, HE .
NATURE, 2003, 421 (6925) :859-863
[2]  
Aravind L., 2001, GENOME BIOL, V2, p7.1
[3]  
BARBARA N, 1989, NUCLEOS NUCLEOT, V8, P1499
[4]   Trm9-catalyzed tRNA modifications link translation to the DNA damage response [J].
Begley, Ulrike ;
Dyavaiah, Madhu ;
Patil, Ashish ;
Rooney, John P. ;
DiRenzo, Dan ;
Young, Christine M. ;
Conklin, Douglas S. ;
Zitomer, Richard S. ;
Begley, Thomas J. .
MOLECULAR CELL, 2007, 28 (05) :860-870
[5]   Bioinformatic mapping of AlkB homology domains in viruses [J].
Bratlie, MS ;
Drablos, F .
BMC GENOMICS, 2005, 6 (1)
[6]   Variation in FTO contributes to childhood obesity and severe adult obesity [J].
Dina, Christian ;
Meyre, David ;
Gallina, Sophie ;
Durand, Emmanuelle ;
Koerner, Antje ;
Jacobson, Peter ;
Carlsson, Lena M. S. ;
Kiess, Wieland ;
Vatin, Vincent ;
Lecoeur, Cecile ;
Delplanque, Jerome ;
Vaillant, Emmanuel ;
Pattou, Francois ;
Ruiz, Juan ;
Weill, Jacques ;
Levy-Marchal, Claire ;
Horber, Fritz ;
Potoczna, Natascha ;
Hercberg, Serge ;
Le Stunff, Catherine ;
Bougneres, Pierre ;
Kovacs, Peter ;
Marre, Michel ;
Balkau, Beverley ;
Cauchi, Stephane ;
Chevre, Jean-Claude ;
Froguel, Philippe .
NATURE GENETICS, 2007, 39 (06) :724-726
[7]   Reversal of DNA alkylation damage by two human dioxygenases [J].
Duncan, T ;
Trewick, SC ;
Koivisto, P ;
Bates, PA ;
Lindahl, T ;
Sedgwick, B .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) :16660-16665
[8]   AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli [J].
Falnes, PO ;
Johansen, RF ;
Seeberg, E .
NATURE, 2002, 419 (6903) :178-182
[9]   Inactivation of the Fto gene protects from obesity [J].
Fischer, Julia ;
Koch, Linda ;
Emmerling, Christian ;
Vierkotten, Jeanette ;
Peters, Thomas ;
Bruening, Jens C. ;
Ruether, Ulrich .
NATURE, 2009, 458 (7240) :894-U10
[10]   A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity [J].
Frayling, Timothy M. ;
Timpson, Nicholas J. ;
Weedon, Michael N. ;
Zeggini, Eleftheria ;
Freathy, Rachel M. ;
Lindgren, Cecilia M. ;
Perry, John R. B. ;
Elliott, Katherine S. ;
Lango, Hana ;
Rayner, Nigel W. ;
Shields, Beverley ;
Harries, Lorna W. ;
Barrett, Jeffrey C. ;
Ellard, Sian ;
Groves, Christopher J. ;
Knight, Bridget ;
Patch, Ann-Marie ;
Ness, Andrew R. ;
Ebrahim, Shah ;
Lawlor, Debbie A. ;
Ring, Susan M. ;
Ben-Shlomo, Yoav ;
Jarvelin, Marjo-Riitta ;
Sovio, Ulla ;
Bennett, Amanda J. ;
Melzer, David ;
Ferrucci, Luigi ;
Loos, Ruth J. F. ;
Barroso, Ines ;
Wareham, Nicholas J. ;
Karpe, Fredrik ;
Owen, Katharine R. ;
Cardon, Lon R. ;
Walker, Mark ;
Hitman, Graham A. ;
Palmer, Colin N. A. ;
Doney, Alex S. F. ;
Morris, Andrew D. ;
Smith, George Davey ;
Hattersley, Andrew T. ;
McCarthy, Mark I. .
SCIENCE, 2007, 316 (5826) :889-894