共 78 条
Genomics and the immune system
被引:7
作者:

Pipkin, Matthew E.
论文数: 0 引用数: 0
h-index: 0
机构:
Immune Dis Inst, Boston, MA USA
Harvard Univ, Sch Med, Boston, MA USA Biomed Res Inst, CH-6500 Bellinzona, Switzerland

Monticelli, Silvia
论文数: 0 引用数: 0
h-index: 0
机构:
Biomed Res Inst, CH-6500 Bellinzona, Switzerland Biomed Res Inst, CH-6500 Bellinzona, Switzerland
机构:
[1] Biomed Res Inst, CH-6500 Bellinzona, Switzerland
[2] Immune Dis Inst, Boston, MA USA
[3] Harvard Univ, Sch Med, Boston, MA USA
来源:
关键词:
epigenetic;
genome-wide;
lymphocytes;
non-coding RNAs;
transcription;
D O I:
10.1111/j.1365-2567.2008.02818.x
中图分类号:
R392 [医学免疫学];
Q939.91 [免疫学];
学科分类号:
100102 ;
摘要:
While the hereditary information encoded in the Watson-Crick base pairing of genomes is largely static within a given individual, access to this information is controlled by dynamic mechanisms. The human genome is pervasively transcribed, but the roles played by the majority of the non-protein-coding genome sequences are still largely unknown. In this review we focus on insights to gene transcriptional regulation by placing special emphasis on genome-wide approaches, and on how non-coding RNAs, which derive from global transcription of the genome, in turn control gene expression. We review recent progress in the field with highlights on the immune system.
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页码:23 / 32
页数:10
相关论文
共 78 条
[1]
Noncoding transcription controls downstream promoters to regulate T-cell receptor α recombination
[J].
Abarrategui, Iratxe
;
Krangel, Michael S.
.
EMBO JOURNAL,
2007, 26 (20)
:4380-4390

Abarrategui, Iratxe
论文数: 0 引用数: 0
h-index: 0
机构:
Duke Univ, Dept Immunol, Med Ctr, Durham, NC 27710 USA Duke Univ, Dept Immunol, Med Ctr, Durham, NC 27710 USA

Krangel, Michael S.
论文数: 0 引用数: 0
h-index: 0
机构:
Duke Univ, Dept Immunol, Med Ctr, Durham, NC 27710 USA Duke Univ, Dept Immunol, Med Ctr, Durham, NC 27710 USA
[2]
Positive selection induces CD4 promoter and enhancer function
[J].
Adlam, M
;
Duncan, DD
;
Ng, DK
;
Siu, G
.
INTERNATIONAL IMMUNOLOGY,
1997, 9 (06)
:877-887

Adlam, M
论文数: 0 引用数: 0
h-index: 0
机构:
COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA

Duncan, DD
论文数: 0 引用数: 0
h-index: 0
机构:
COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA

Ng, DK
论文数: 0 引用数: 0
h-index: 0
机构:
COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA

Siu, G
论文数: 0 引用数: 0
h-index: 0
机构:
COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA COLUMBIA UNIV COLL PHYS & SURG, DEPT MICROBIOL, NEW YORK, NY 10032 USA
[3]
Regulation of Th2 differentiation and Il4 locus accessibility
[J].
Ansel, K. Mark
;
Djuretic, Ivana
;
Tanasa, Bogdan
;
Rao, Anjana
.
ANNUAL REVIEW OF IMMUNOLOGY,
2006, 24
:607-656

Ansel, K. Mark
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA

Djuretic, Ivana
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA

Tanasa, Bogdan
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA

Rao, Anjana
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA Harvard Univ, Sch Med, CBR Inst Biomed Res, Boston, MA 02115 USA
[4]
High-resolution profiling of histone methylations in the human genome
[J].
Barski, Artern
;
Cuddapah, Suresh
;
Cui, Kairong
;
Roh, Tae-Young
;
Schones, Dustin E.
;
Wang, Zhibin
;
Wei, Gang
;
Chepelev, Iouri
;
Zhao, Keji
.
CELL,
2007, 129 (04)
:823-837

Barski, Artern
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Cuddapah, Suresh
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Cui, Kairong
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Roh, Tae-Young
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Schones, Dustin E.
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Wang, Zhibin
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Wei, Gang
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Chepelev, Iouri
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA

Zhao, Keji
论文数: 0 引用数: 0
h-index: 0
机构: NHLBI, Lab Mol Immunol, NIH, Bethesda, MD 20892 USA
[5]
Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing
[J].
Bennasser, Y
;
Le, SY
;
Benkirane, M
;
Jeang, KT
.
IMMUNITY,
2005, 22 (05)
:607-619

Bennasser, Y
论文数: 0 引用数: 0
h-index: 0
机构: NIAID, Mol Virol Sect, Mol Microbiol Lab, NIH, Bethesda, MD 20892 USA

Le, SY
论文数: 0 引用数: 0
h-index: 0
机构: NIAID, Mol Virol Sect, Mol Microbiol Lab, NIH, Bethesda, MD 20892 USA

Benkirane, M
论文数: 0 引用数: 0
h-index: 0
机构: NIAID, Mol Virol Sect, Mol Microbiol Lab, NIH, Bethesda, MD 20892 USA

Jeang, KT
论文数: 0 引用数: 0
h-index: 0
机构: NIAID, Mol Virol Sect, Mol Microbiol Lab, NIH, Bethesda, MD 20892 USA
[6]
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
[J].
Birney, Ewan
;
Stamatoyannopoulos, John A.
;
Dutta, Anindya
;
Guigo, Roderic
;
Gingeras, Thomas R.
;
Margulies, Elliott H.
;
Weng, Zhiping
;
Snyder, Michael
;
Dermitzakis, Emmanouil T.
;
Stamatoyannopoulos, John A.
;
Thurman, Robert E.
;
Kuehn, Michael S.
;
Taylor, Christopher M.
;
Neph, Shane
;
Koch, Christoph M.
;
Asthana, Saurabh
;
Malhotra, Ankit
;
Adzhubei, Ivan
;
Greenbaum, Jason A.
;
Andrews, Robert M.
;
Flicek, Paul
;
Boyle, Patrick J.
;
Cao, Hua
;
Carter, Nigel P.
;
Clelland, Gayle K.
;
Davis, Sean
;
Day, Nathan
;
Dhami, Pawandeep
;
Dillon, Shane C.
;
Dorschner, Michael O.
;
Fiegler, Heike
;
Giresi, Paul G.
;
Goldy, Jeff
;
Hawrylycz, Michael
;
Haydock, Andrew
;
Humbert, Richard
;
James, Keith D.
;
Johnson, Brett E.
;
Johnson, Ericka M.
;
Frum, Tristan T.
;
Rosenzweig, Elizabeth R.
;
Karnani, Neerja
;
Lee, Kirsten
;
Lefebvre, Gregory C.
;
Navas, Patrick A.
;
Neri, Fidencio
;
Parker, Stephen C. J.
;
Sabo, Peter J.
;
Sandstrom, Richard
;
Shafer, Anthony
.
NATURE,
2007, 447 (7146)
:799-816

Birney, Ewan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dutta, Anindya
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Guigo, Roderic
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Gingeras, Thomas R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Margulies, Elliott H.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Weng, Zhiping
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Snyder, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dermitzakis, Emmanouil T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Thurman, Robert E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Kuehn, Michael S.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Taylor, Christopher M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neph, Shane
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Koch, Christoph M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Asthana, Saurabh
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Malhotra, Ankit
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Adzhubei, Ivan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Greenbaum, Jason A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Andrews, Robert M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Flicek, Paul
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Boyle, Patrick J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Cao, Hua
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Carter, Nigel P.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Clelland, Gayle K.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Davis, Sean
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Day, Nathan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dhami, Pawandeep
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dillon, Shane C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dorschner, Michael O.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Fiegler, Heike
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Giresi, Paul G.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Goldy, Jeff
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Hawrylycz, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Haydock, Andrew
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Humbert, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

James, Keith D.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Brett E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Ericka M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Frum, Tristan T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Rosenzweig, Elizabeth R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Karnani, Neerja
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lee, Kirsten
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lefebvre, Gregory C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Navas, Patrick A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neri, Fidencio
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Parker, Stephen C. J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sabo, Peter J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sandstrom, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Shafer, Anthony
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
[7]
A GENE FROM THE REGION OF THE HUMAN X-INACTIVATION CENTER IS EXPRESSED EXCLUSIVELY FROM THE INACTIVE X-CHROMOSOME
[J].
BROWN, CJ
;
BALLABIO, A
;
RUPERT, JL
;
LAFRENIERE, RG
;
GROMPE, M
;
TONLORENZI, R
;
WILLARD, HF
.
NATURE,
1991, 349 (6304)
:38-44

BROWN, CJ
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

BALLABIO, A
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

RUPERT, JL
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

LAFRENIERE, RG
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

GROMPE, M
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

TONLORENZI, R
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305

WILLARD, HF
论文数: 0 引用数: 0
h-index: 0
机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305
[8]
A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse β-globin locus
[J].
Bulger, M
;
Schübeler, D
;
Bender, MA
;
Hamilton, J
;
Farrell, CM
;
Hardison, RC
;
Groudine, M
.
MOLECULAR AND CELLULAR BIOLOGY,
2003, 23 (15)
:5234-5244

Bulger, M
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Schübeler, D
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Bender, MA
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Hamilton, J
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Farrell, CM
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Hardison, RC
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA

Groudine, M
论文数: 0 引用数: 0
h-index: 0
机构: NIDDKD, NIH, Bethesda, MD 20892 USA
[9]
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
[J].
Cai, Shutao
;
Lee, Charles C.
;
Kohwi-Shigematsu, Terumi
.
NATURE GENETICS,
2006, 38 (11)
:1278-1288

Cai, Shutao
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Lee, Charles C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA

Kohwi-Shigematsu, Terumi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA
[10]
Chromatin remodeling complexes: strength in diversity, precision through specialization
[J].
Cairns, BR
.
CURRENT OPINION IN GENETICS & DEVELOPMENT,
2005, 15 (02)
:185-190

Cairns, BR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Utah, Sch Med, Dept Oncol Sci, Salt Lake City, UT 84112 USA