Combined pharmacophore, virtual screening and molecular dynamics studies to identify Bruton's tyrosine kinase inhibitors

被引:16
|
作者
Sakthivel, Seethalakshmi [1 ]
Habeeb, S. K. M. [1 ]
机构
[1] SRM Univ, Sch Bioengn, Dept Genet Engn, Kattankulathur 603203, Tamil Nadu, India
来源
关键词
BTK; Bruton's tyrosine kinase; pharmacophore; virtual screening; molecular dynamics; CHRONIC LYMPHOCYTIC-LEUKEMIA; BTK INHIBITORS; DISCOVERY; DOCKING; POTENT; IDENTIFICATION; 3D-QSAR;
D O I
10.1080/07391102.2017.1415821
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bruton's tyrosine Kinase (BTK) is a cytoplasmic, non-receptor tyrosine kinase expressed in hematopoietic cells. BTK plays a critical role in many cellular signalling pathways making it a potential target to treat autoimmune diseases and cancer. BTK signalling is important for the production of arthritis-associated antibodies, and inhibiting BTK will help the system to block the production of disease-associated antibodies. In this study, we have implemented ligand-based pharmacophore modelling and virtual screening against natural compounds followed by molecular docking, density functional theory and molecular dynamics studies for 50 ns. Four compounds with high affinity towards BTK were identified, and it could be used as a potent lead molecule for designing BTK inhibitor.
引用
收藏
页码:4320 / 4337
页数:18
相关论文
共 50 条
  • [1] Pharmacophore modeling and virtual screening in search of novel Bruton’s tyrosine kinase inhibitors
    Aditya Sharma
    B. K. Thelma
    Journal of Molecular Modeling, 2019, 25
  • [2] Pharmacophore modeling and virtual screening in search of novel Bruton's tyrosine kinase inhibitors
    Sharma, Aditya
    Thelma, B. K.
    JOURNAL OF MOLECULAR MODELING, 2019, 25 (07)
  • [3] Identification of potential inhibitors for Bruton's Tyrosine Kinase (BTK) based on pharmacophore-based virtual screening
    Arba, Muhammad
    Nurmawati, Oktovia
    BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY, 2020, 10 (03): : 5472 - 5477
  • [4] Discovery of Novel Bruton's Tyrosine Kinase Inhibitors Using a Hybrid Protocol of Virtual Screening Approaches Based on SVM Model, Pharmacophore and Molecular Docking
    Wan, Hua-Lin
    Wang, Ze-Rong
    Li, Lin-Li
    Cheng, Chuan
    Ji, Pan
    Liu, Jing-Jing
    Zhang, Hui
    Zou, Jun
    Yang, Sheng-Yong
    CHEMICAL BIOLOGY & DRUG DESIGN, 2012, 80 (03) : 366 - 373
  • [5] Pharmacophore modeling and virtual screening to identify potential RET kinase inhibitors
    Shih, Kuei-Chung
    Shiau, Chung-Wai
    Chen, Ting-Shou
    Ko, Ching-Huai
    Lin, Chih-Lung
    Lin, Chun-Yuan
    Hwang, Chrong-Shiong
    Tang, Chuan-Yi
    Chen, Wan-Ru
    Huang, Jui-Wen
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2011, 21 (15) : 4490 - 4497
  • [6] Pharmacophore modelling, molecular docking and virtual screening for EGFR (HER 1) tyrosine kinase inhibitors
    Gupta, A. K.
    Bhunia, S. S.
    Balaramnavar, V. M.
    Saxena, A. K.
    SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2011, 22 (3-4) : 239 - 263
  • [7] Pharmacophore modeling, virtual screening, molecular docking and dynamics studies for the discovery of HER2-tyrosine kinase inhibitors: An in-silico approach
    Matada, Gurubasavaraja Swamy Purwarga
    Dhiwar, Prasad Sanjay
    Abbas, Nahid
    Singh, Ekta
    Ghara, Abhishek
    Patil, Rajesh
    Raghavendra, Nulgumnalli Manjunathaiah
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1257
  • [8] Effective virtual screening strategy focusing on the identification of novel Bruton's tyrosine kinase inhibitors
    Xiao, Jianhu
    Zhang, Shengping
    Luo, Minghao
    Zou, Yi
    Zhang, Yihua
    Lai, Yisheng
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2015, 60 : 142 - 154
  • [9] 3D-QSAR-Based Pharmacophore Modeling, Virtual Screening, and Molecular Dynamics Simulations for the Identification of Spleen Tyrosine Kinase Inhibitors
    Kumar, Vikas
    Parate, Shraddha
    Danishuddin
    Zeb, Amir
    Singh, Pooja
    Lee, Gihwan
    Jung, Tae Sung
    Lee, Keun Woo
    Ha, Min Woo
    FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2022, 12
  • [10] Pharmacophore Modeling and Virtual Screening Studies of Checkpoint Kinase 1 Inhibitors
    Chen, Jin-Juan
    Liu, Ting-Lin
    Yang, Li-Jun
    Li, Lin-Li
    Wei, Yu-Quan
    Yang, Sheng-Yong
    CHEMICAL & PHARMACEUTICAL BULLETIN, 2009, 57 (07) : 704 - 709