The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils

被引:46
作者
Dai, Y. [1 ]
Yan, Z. [1 ]
Jia, L. [2 ]
Zhang, S. [1 ]
Gao, L. [3 ]
Wei, X. [3 ]
Mei, Z. [4 ]
Liu, X. [1 ]
机构
[1] Chinese Acad Sci, Chengdu Inst Biol, Key Lab Environm & Appl Microbiol, Environm Microbiol Key Lab Sichuan Prov, Chengdu, Sichuan, Peoples R China
[2] Sichuan Univ, West China Hosp, State Key Lab Biotherapy, Chengdu, Sichuan, Peoples R China
[3] Chongqing Acad Agr Sci, Dept Agr Engn, Chongqing, Peoples R China
[4] Minist Agr, Ctr Agr Engn, Biogas Inst, Chengdu, Peoples R China
基金
中国国家自然科学基金; 中国科学院西部之光基金; 对外科技合作项目(国际科技项目);
关键词
cellulose; chitin; degradation; methane; microbial communities; wetland soils; FERMENTANS GEN. NOV; ANAEROBIC-DIGESTION; EMENDED DESCRIPTION; BACTERIAL COMMUNITY; UNCULTURED BACTERIA; TREPONEMA-BRYANTII; ZOIGE WETLAND; PROPIONATE; DIVERSITY; PELOSINUS;
D O I
10.1111/jam.13164
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
AimsTo reveal the microbial communities from Qinghai-Tibetan Plateau wetland soils that have the potential to be used in the utilization of cellulosic and chitinous biomass at low temperatures (25 degrees C). Methods and ResultsSoil samples collected from six wetlands on Qinghai-Tibetan Plateau were supplemented with or without cellulose and chitin flakes, and anaerobically incubated at 25 and 15 degrees C; high-throughput 16S rRNA gene sequencing was used to access the composition and localization (in the slurry and on the surface) of enriched microbial communities; a hypothetical model was constructed to demonstrate the functional roles of involved microbes mainly at genus level. Overall, microbial communities from Qinghai-Tibetan Plateau wetlands showed significant potential to convert both cellulose and chitin to methane at low temperatures; Clostridium III, Clostridium XIVa, Paludibacter, Parcubacteria, Saccharofermentans, Pelotomaculum, Methanosaeta, Methanobrevibacter, Methanoregula, Methanospirillum and Methanosarcina participated in methanogenic degradation of both cellulose and chitin through the roles of hydrolytic, saccharolytic and secondary fermenters and methanogens respectively. Acetotrophic methanogens were mainly enriched in the slurries, while hydrogenotrophic methanogens could be both in the slurries and on the surface. ConclusionsThe composition and localization of microbial communities that could effectively convert cellulose and chitin to methane at low temperatures have been revealed by high-throughput 16S rRNA gene sequencing methods, and reviewing the literatures on the microbial pure culture helped to elucidate functional roles of significantly enriched microbes. Significance and Impact of the StudyThis study will contribute to the understanding of carbon and nitrogen cycling of cellulose and chitin in cold-area wetlands and provide fundamental information to obtain microbial resources for the utilization of biomass wastes at low temperatures.
引用
收藏
页码:163 / 176
页数:14
相关论文
共 95 条
[1]   Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes [J].
Albertsen, Mads ;
Hugenholtz, Philip ;
Skarshewski, Adam ;
Nielsen, Kare L. ;
Tyson, Gene W. ;
Nielsen, Per H. .
NATURE BIOTECHNOLOGY, 2013, 31 (06) :533-+
[2]   Low temperature anaerobic digestion of mixtures of llama, cow and sheep manure for improved methane production [J].
Alvarez, Rene ;
Liden, Gunnar .
BIOMASS & BIOENERGY, 2009, 33 (03) :527-533
[3]  
[Anonymous], BERGEYS MANUAL SYSTE
[4]   Improved purification and PCR amplification of DNA from environmental samples [J].
Arbeli, Ziv ;
Fuentes, Cilia L. .
FEMS MICROBIOLOGY LETTERS, 2007, 272 (02) :269-275
[5]   ACETOBACTERIUM, A NEW GENUS OF HYDROGEN-OXIDIZING, CARBON DIOXIDE-REDUCING, ANAEROBIC BACTERIA [J].
BALCH, WE ;
SCHOBERTH, S ;
TANNER, RS ;
WOLFE, RS .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1977, 27 (04) :355-361
[6]  
Baldani J.I., 2014, The Prokaryotes: Alphaproteobacteria and Betaproteobacteria, P533, DOI DOI 10.1007/978-3-642-30197-1300
[7]   Shift of Propionate-Oxidizing Bacteria with HRT Decrease in an UASB Reactor Containing Propionate as a Sole Carbon Source [J].
Ban, Qiaoying ;
Zhang, Liguo ;
Li, Jianzheng .
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2015, 175 (01) :274-286
[8]  
Basu D., 2014, INT J ENV SCI, V4, P458
[9]   Bacterial chitin degradation-mechanisms and ecophysiological strategies [J].
Beier, Sara ;
Bertilsson, Stefan .
FRONTIERS IN MICROBIOLOGY, 2013, 4
[10]   Uncoupling of chitinase activity and uptake of hydrolysis products in freshwater bacterioplankton [J].
Beier, Sara ;
Bertilsson, Stefan .
LIMNOLOGY AND OCEANOGRAPHY, 2011, 56 (04) :1179-1188