Directions for research and training in plant omics: Big Questions and Big Data

被引：18

作者：

Argueso, Cristiana T. ^{[1
]}

Assmann, Sarah M. ^{[2
]}

Birnbaum, Kenneth D. ^{[3
]}

Chen, Sixue ^{[4
,5
]}

Dinneny, Jose R. ^{[6
]}

Doherty, Colleen J. ^{[7
]}

Eveland, Andrea L. ^{[8
]}

Friesner, Joanna ^{[9
]}

Greenlee, Vanessa R. ^{[10
]}

Law, Julie A. ^{[11
,12
]}

Marshall-Colon, Amy ^{[13
]}

Mason, Grace Alex ^{[14
,15
]}

O'Lexy, Ruby ^{[16
]}

Peck, Scott C. ^{[17
]}

Schmitz, Robert J. ^{[18
]}

Song, Liang ^{[19
]}

Stern, David ^{[20
]}

Varagona, Marguerite J. ^{[21
]}

Walley, Justin W. ^{[22
]}

Williams, Cranos M. ^{[23
]}

机构：

[1] Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA

[2] Penn State Univ, Dept Biol, University Pk, PA 16802 USA

[3] NYU, Dept Biol, Ctr Genom & Syst Biol, New York, NY 10003 USA

[4] Univ Florida, Genet Inst, Dept Biol, Plant Mol & Cellular Biol Program, Gainesville, FL USA

[5] Univ Florida, Interdisciplinary Ctr Biotechnol Res, Prote & Mass Spectrometry, Gainesville, FL USA

[6] Stanford Univ, Dept Biol, Stanford, CA 94305 USA

[7] North Carolina State Univ, Dept Mol & Struct Biochem, Raleigh, NC USA

[8] Donald Danforth Plant Sci Ctr, St Louis, MO USA

[9] Univ Calif Davis, Davis, CA USA

[10] Cornell Univ, Coll Agr & Life Sci, Int Programs, New York, NY 10021 USA

[11] Salk Inst Biol Studies, Plant Mol & Cellular Biol Lab, 10010 N Torrey Pines Rd, La Jolla, CA 92037 USA

[12] Univ Calif San Diego, Div Biol Sci, La Jolla, CA 92093 USA

[13] Univ Illinois, Dept Plant Biol, Urbana, IL USA

[14] Univ Calif Davis, Dept Plant Biol, Davis, CA USA

[15] Univ Calif Davis, Genome Ctr, Davis, CA USA

[16] Coriell Inst Med Res, Camden, NJ USA

[17] Univ Missouri, Christopher S Bond Life Sci Ctr, Div Biochem, Interdisciplinary Plant Grp, Columbia, MO USA

[18] Univ Georgia, Dept Genet, Athens, GA 30602 USA

[19] Univ British Columbia, Dept Bot, Vancouver, BC, Canada

[20] Boyce Thompson Inst Plant Res, New York, NY USA

[21] Bayer US Crop Sci Div, Plant Biotechnol, Chesterfield, MO USA

[22] Iowa State Univ, Dept Plant Pathol & Microbiol, Ames, IA USA

[23] North Carolina State Univ, Dept Elect & Comp Engn, Raleigh, NC USA

来源：

PLANT DIRECT | 2019年 / 3卷 / 04期

基金：

美国国家科学基金会;

关键词：

genomics; metabolomics; proteomics; training; transcriptomics; GENOME-WIDE ASSOCIATION; RNA SECONDARY STRUCTURE; GENE-EXPRESSION MAP; ARABIDOPSIS-THALIANA; DNA METHYLATION; SINGLE-CELL; AUXIN RESPONSE; PROTEIN; REVEALS; IDENTIFICATION;

D O I：

10.1002/pld3.133

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

A key remit of the NSF-funded "Arabidopsis Research and Training for the 21st Century" (ART-21) Research Coordination Network has been to convene a series of workshops with community members to explore issues concerning research and training in plant biology, including the role that research using Arabidopsis thaliana can play in addressing those issues. A first workshop focused on training needs for bioinformatic and computational approaches in plant biology was held in 2016, and recommendations from that workshop have been published (Friesner et al., Plant Physiology, 175, 2017, 1499). In this white paper, we provide a summary of the discussions and insights arising from the second ART-21 workshop. The second workshop focused on experimental aspects of omics data acquisition and analysis and involved a broad spectrum of participants from academics and industry, ranging from graduate students through post-doctorates, early career and established investigators. Our hope is that this article will inspire beginning and established scientists, corporations, and funding agencies to pursue directions in research and training identified by this workshop, capitalizing on the reference species Arabidopsis thaliana and other valuable plant systems.

引用

页数：16

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