Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

被引：29

作者：

Hammer, Mathias ^{[1
,2
]}

Huisman, Maximiliaan ^{[1
]}

Rigano, Alessandro ^{[3
]}

Boehm, Ulrike ^{[4
]}

Chambers, James J. ^{[5
]}

Gaudreault, Nathalie ^{[6
]}

North, Alison J. ^{[7
]}

Pimentel, Jaime A. ^{[8
]}

Sudar, Damir ^{[9
]}

Bajcsy, Peter ^{[10
]}

Brown, Claire M. ^{[11
]}

Corbett, Alexander D. ^{[12
]}

Faklaris, Orestis ^{[13
]}

Lacoste, Judith ^{[14
]}

Laude, Alex ^{[15
]}

Nelson, Glyn ^{[15
]}

Nitschke, Roland ^{[16
,17
]}

Farzam, Farzin ^{[1
]}

Smith, Carlas S. ^{[18
,19
]}

Grunwald, David ^{[1
]}

Strambio-De-Castillia, Caterina ^{[3
]}

机构：

[1] UMass Chan Med Sch, RNA Therapeut Inst, Worcester, MA USA

[2] Tech Univ Darmstadt, Dept Biol, Darmstadt, Germany

[3] UMass Chan Med Sch, Program Mol Med, Worcester, MA 01655 USA

[4] Howard Hughes Med Inst, Janelia Res Campus, Ashburn, VA USA

[5] Univ Massachusetts, Inst Appl Life Sci, Amherst, MA 01003 USA

[6] Allen Inst Cell Sci, Seattle, WA USA

[7] Rockefeller Univ, 1230 York Ave, New York, NY 10021 USA

[8] Univ Nacl Autonoma Mexico, Inst Biotecnol, Lab Nacl Microscopia Avanzada, Cuernavaca, Morelos, Mexico

[9] Quantitat Imaging Syst LLC, Portland, OR USA

[10] NIST, Gaithersburg, MD 20899 USA

[11] McGill Univ, Adv BioImaging Facil ABIF, Montreal, PQ, Canada

[12] Univ Exeter, Dept Phys & Astron, Exeter, Devon, England

[13] Univ Montpellier, INSERM, CNRS, MRI,BCM, Montpellier, France

[14] MIA Cellavie Inc, Montreal, PQ, Canada

[15] Newcastle Univ, Bioimaging Unit, Newcastle Upon Tyne, Tyne & Wear, England

[16] Albert Ludwigs Univ Freiburg, Life Imaging Ctr, Freiburg, Germany

[17] Albert Ludwigs Univ Freiburg, BIOSS Ctr Biol Signaling Studies, Freiburg, Germany

[18] Delft Univ Technol, Delft Ctr Syst & Control, Delft, Netherlands

[19] Delft Univ Technol, Dept Imaging Phys, Delft, Netherlands

来源：

NATURE METHODS | 2021年 / 18卷 / 12期

基金：

美国国家科学基金会;

关键词：

MINIMUM INFORMATION; IMAGE DATA; REPRODUCIBILITY;

D O I：

10.1038/s41592-021-01327-9

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Rigorous record-keeping and quality control are required to ensure the quality, reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light Microscopy Metadata Specifications that extend the OME Data Model, scale with experimental intent and complexity, and make it possible for scientists to create comprehensive records of imaging experiments.

引用

页码：1427 / 1440

页数：14

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