A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task

被引:10
作者
Chandravadia, N. [1 ]
Liang, D. [2 ]
Schjetnan, A. G. P. [3 ]
Carlson, A. [1 ]
Faraut, M. [1 ]
Chung, J. M. [4 ]
Reed, C. M. [4 ]
Dichter, B. [5 ,6 ]
Maoz, U. [2 ,7 ]
Kalia, S. K. [3 ,8 ]
Valiante, T. A. [3 ,8 ]
Mamelak, A. N. [1 ]
Rutishauser, U. [1 ,4 ,7 ,9 ,10 ]
机构
[1] Cedars Sinai Med Ctr, Dept Neurosurg, Los Angeles, CA 90048 USA
[2] Chapman Univ, Schmid Coll Sci & Technol, Crean Coll Hlth & Behav Sci, Inst Interdisciplinary Brain & Behav Sci, Orange, CA USA
[3] Toronto Western Hosp, Krembil Brain Inst, Toronto, ON, Canada
[4] Cedars Sinai Med Ctr, Dept Neurol, Los Angeles, CA 90048 USA
[5] Lawrence Berkeley Natl Lab, Biol Syst & Engn Div, Berkeley, CA USA
[6] Stanford Univ, Dept Neurosurg, Stanford, CA 94305 USA
[7] CALTECH, Div Biol & Biol Engn, Pasadena, CA 91125 USA
[8] Univ Toronto, Div Neurosurg, Dept Surg, Toronto, ON, Canada
[9] CALTECH, Computat & Neural Syst Program, Pasadena, CA 91125 USA
[10] Cedars Sinai Med Ctr, Dept Biomed Sci, Ctr Neural Sci & Med, Los Angeles, CA 90048 USA
基金
美国国家科学基金会;
关键词
HUMAN HIPPOCAMPUS; RECOGNITION; RECORDINGS; AMYGDALA; FORMAT;
D O I
10.1038/s41597-020-0415-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy re-use of this hard-to-obtain data for both teaching and research on the mechanisms of human memory.
引用
收藏
页数:12
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