Change of Heart: the Epitranscriptome of Small Non-coding RNAs in Heart Failure

被引:4
作者
Woudenberg, Tamar [1 ,2 ]
Kruyt, Nyika D. [3 ]
Quax, Paul H. A. [1 ,2 ]
Nossent, A. Yael [1 ,2 ]
机构
[1] Leiden Univ, Med Ctr, Dept Surg, D6-P,POB 9600, NL-2300 RC Leiden, Netherlands
[2] Leiden Univ, Med Ctr, Einthoven Lab Expt Vasc Med, Leiden, Netherlands
[3] Leiden Univ, Med Ctr, Dept Neurol, Leiden, Netherlands
关键词
Epitranscriptome; Small noncoding RNAs; Heart failure; Chemical modifications; Post-transcriptional regulation; MESSENGER-RNA; DNA METHYLATION; MICRORNA; ADENOSINE; EXPRESSION; 5-METHYLCYTOSINE; ALTERS; TARGET; HYPERTROPHY; DYSFUNCTION;
D O I
10.1007/s11897-022-00561-2
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Purpose of Review Small non-coding RNAs regulate gene expression and are highly implicated in heart failure. Recently, an additional level of post-transcriptional regulation has been identified, referred to as the epitranscriptome, which encompasses the body of post-transcriptional modifications that are placed on RNA molecules. In this review, we summarize the current knowledge on the small non-coding RNA epitranscriptome in heart failure. Recent Findings With the rise of new methods to study RNA modifications, epitranscriptome research has begun to take flight. Over the past 3 years, the number of publications on the epitranscriptome in heart failure has significantly increased, and we expect many more highly relevant publications to come out over the next few years. Currently, at least six modifications on small non-coding RNAs have been investigated in heart failure-relevant studies, namely N6-adenosine, N5-cytosine and N7-guanosine methylation, 2'-O-ribose-methylation, adenosine-to-inosine editing, and isomiRs. Their potential role in heart failure is discussed.
引用
收藏
页码:255 / 266
页数:12
相关论文
共 131 条
[1]   HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events [J].
Alarcon, Claudio R. ;
Goodarzi, Hani ;
Lee, Hyeseung ;
Liu, Xuhang ;
Tavazoie, Saeed ;
Tavazoie, Sohail F. .
CELL, 2015, 162 (06) :1299-1308
[2]   Modulation of ADAR mRNA expression in patients with congenital heart defects [J].
Altaf, Faiza ;
Vesely, Cornelia ;
Sheikh, Abdul Malik ;
Munir, Rubab ;
Shah, Syed Tahir Abbas ;
Tariq, Aamira .
PLOS ONE, 2019, 14 (04)
[3]   A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice [J].
Aravin, Alexei A. ;
Sachidanandam, Ravi ;
Bourc'his, Deborah ;
Schaefer, Christopher ;
Pezic, Dubravka ;
Toth, Katalin Fejes ;
Bestor, Timothy ;
Hannon, Gregory J. .
MOLECULAR CELL, 2008, 31 (06) :785-799
[4]   RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions [J].
Ayadi, Lilia ;
Galvanin, Adeline ;
Pichot, Florian ;
Marchand, Virginie ;
Motorin, Yuri .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2019, 1862 (03) :253-269
[5]   Inflammation and fibrosis in murine models of heart failure [J].
Bacmeister, Lucas ;
Schwarzl, Michael ;
Warnke, Svenja ;
Stoffers, Bastian ;
Blankenberg, Stefan ;
Westermann, Dirk ;
Lindner, Diana .
BASIC RESEARCH IN CARDIOLOGY, 2019, 114 (03)
[6]   Genome-wide identification and analysis of A-to-I RNA editing events in bovine by transcriptome sequencing [J].
Bakhtiarizadeh, Mohammad Reza ;
Salehi, Abdolreza ;
Rivera, Rocio Melissa .
PLOS ONE, 2018, 13 (02)
[7]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[8]   Therapeutic inhibition of the miR-34 family attenuates pathological cardiac remodeling and improves heart function [J].
Bernardo, Bianca C. ;
Gao, Xiao-Ming ;
Winbanks, Catherine E. ;
Boey, Esther J. H. ;
Tham, Yow Keat ;
Kiriazis, Helen ;
Gregorevic, Paul ;
Obad, Susanna ;
Kauppinen, Sakari ;
Du, Xiao-Jun ;
Lin, Ruby C. Y. ;
McMullen, Julie R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (43) :17615-17620
[9]   Changes in m6A RNA methylation contribute to heart failure progression by modulating translation [J].
Berulava, Tea ;
Buchholz, Eric ;
Elerdashvili, Vakhtang ;
Pena, Tonatiuh ;
Islam, Rezaul ;
Lbik, Dawid ;
Mohamed, Belal A. ;
Renner, Andre ;
von Lewinski, Dirk ;
Sacherer, Michael ;
Bohnsack, Katherine E. ;
Bohnsack, Markus T. ;
Jain, Gaurav ;
Capece, Vincenzo ;
Cleve, Nicole ;
Burkhardt, Susanne ;
Hasenfuss, Gerd ;
Fischer, Andre ;
Toischer, Karl .
EUROPEAN JOURNAL OF HEART FAILURE, 2020, 22 (01) :54-66
[10]   Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders [J].
Blanco, Sandra ;
Dietmann, Sabine ;
Flores, Joana V. ;
Hussain, Shobbir ;
Kutter, Claudia ;
Humphreys, Peter ;
Lukk, Margus ;
Lombard, Patrick ;
Treps, Lucas ;
Popis, Martyna ;
Kellner, Stefanie ;
Hoelter, Sabine M. ;
Garrett, Lillian ;
Wurst, Wolfgang ;
Becker, Lore ;
Klopstock, Thomas ;
Fuchs, Helmut ;
Gailus-Durner, Valerie ;
de Angelis, Martin Hrabe ;
Karadottir, Ragnhildur T. ;
Helm, Mark ;
Ule, Jernej ;
Gleeson, Joseph G. ;
Odom, Duncan T. ;
Frye, Michaela .
EMBO JOURNAL, 2014, 33 (18) :2020-2039