A census of the lung: CellCards from LungMAP

被引:87
作者
Sun, Xin [1 ,2 ]
Perl, Anne-Karina [3 ,4 ]
Li, Rongbo [1 ]
Bell, Sheila M. [3 ]
Sajti, Eniko [1 ]
Kalinichenko, Vladimir V. [3 ,4 ,5 ]
Kalin, Tanya, V [3 ,4 ]
Misra, Ravi S. [6 ]
Deshmukh, Hitesh [3 ,4 ]
Clair, Geremy [7 ]
Kyle, Jennifer [7 ]
Alexander, Laura E. Crotty [8 ]
Masso-Silva, Jorge A. [8 ]
Kitzmiller, Joseph A. [3 ]
Wikenheiser-Brokamp, Kathryn A. [3 ,9 ,10 ]
Deutsch, Gail [11 ,12 ]
Guo, Minzhe [3 ,4 ]
Du, Yina [3 ]
Morley, Michael P. [13 ,14 ]
Valdez, Michael J. [1 ]
Yu, Haoze, V [1 ]
Jin, Kang [15 ,16 ,17 ]
Bardes, Eric E. [15 ,16 ,17 ]
Zepp, Jarod A. [13 ,18 ]
Neithamer, Terren [13 ,14 ]
Basil, Maria C. [13 ,14 ]
Zacharias, William J. [3 ,19 ]
Verheyden, Jamie [1 ]
Young, Randee [1 ]
Bandyopadhyay, Gautam [6 ]
Lin, Sara [20 ]
Ansong, Charles [7 ]
Adkins, Joshua [7 ]
Salomonis, Nathan [4 ,21 ]
Aronow, Bruce J. [15 ,16 ,17 ]
Xu, Yan [3 ,4 ]
Pryhuber, Gloria [6 ]
Whitsett, Jeff [3 ,4 ]
Morrisey, Edward E. [13 ,14 ,22 ]
机构
[1] Univ Calif San Diego, Dept Pediat, 9500 Gilman Dr, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Dept Biol Sci, 9500 Gilman Dr, La Jolla, CA 92093 USA
[3] Cincinnati Childrens Hosp Med Ctr, Div Neonatol & Pulm Biol, 3333 Burnet Ave, Cincinnati, OH 45229 USA
[4] Univ Cincinnati, Dept Pediat, Coll Med, 3230 Eden Ave, Cincinnati, OH 45267 USA
[5] Cincinnati Childrens Hosp Med Ctr, Ctr Lung Regenerat Med, 3333 Burnet Ave, Cincinnati, OH 45229 USA
[6] Univ Rochester, Dept Pediat, Med Ctr, Div Neonatol, Rochester, NY 14642 USA
[7] Pacific Northwest Natl Lab, Biol Sci Div, Richland, WA 99352 USA
[8] Univ Calif San Diego, Dept Med, Div Pulm Crit Care & Sleep Med, La Jolla, CA 92093 USA
[9] Cincinnati Childrens Hosp Med Ctr, Div Pathol & Lab Med, 3333 Burnet Ave, Cincinnati, OH 45229 USA
[10] Univ Cincinnati, Dept Pathol & Lab Med, Coll Med, 3230 Eden Ave, Cincinnati, OH 45267 USA
[11] Univ Washington, Sch Med, Dept Pathol, Seattle, WA 98195 USA
[12] Seattle Childrens Hosp, Dept Labs, OC 8-720,4800 Sand Point Way Northeast, Seattle, WA 98105 USA
[13] Univ Penn, Penn CHOP Lung Biol Inst, Philadelphia, PA 19104 USA
[14] Univ Penn, Dept Med, Philadelphia, PA 19104 USA
[15] Cincinnati Childrens Hosp Med Ctr, Dept Biomed Informat, Cincinnati, OH 45229 USA
[16] Cincinnati Childrens Hosp Med Ctr, Dept Dev Biol, Cincinnati, OH 45229 USA
[17] Cincinnati Childrens Hosp Med Ctr, Dept Pediat, Cincinnati, OH 45229 USA
[18] Childrens Hosp Philadelphia, Dept Pediat, Philadelphia, PA 19104 USA
[19] Univ Cincinnati, Dept Internal Med, Coll Med, 3230 Eden Ave, Cincinnati, OH 45267 USA
[20] NHLBI, NIH, Bldg 10, Bethesda, MD 20892 USA
[21] Cincinnati Childrens Hosp Med Ctr, Div Biomed Informat, Cincinnati, OH 45229 USA
[22] Univ Penn, Dept Cell & Dev Biol, Philadelphia, PA 19104 USA
关键词
INNATE LYMPHOID-CELLS; PULMONARY NEUROENDOCRINE CELLS; NEUROEPITHELIAL BODY MICROENVIRONMENT; FLOW-CYTOMETRIC ANALYSIS; CONNECTIVE-TISSUE TYPE; BASAL STEM-CELLS; ROR-GAMMA-T; SMOOTH-MUSCLE; PROGENITOR CELLS; DENDRITIC CELLS;
D O I
10.1016/j.devcel.2021.11.007
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The human lung plays vital roles in respiration, host defense, and basic physiology. Recent technological advancements such as single-cell RNA sequencing and genetic lineage tracing have revealed novel cell types and enriched functional properties of existing cell types in lung. The time has come to take a new census. Initiated by members of the NHLBI-funded LungMAP Consortium and aided by experts in the lung biology community, we synthesized current data into a comprehensive and practical cellular census of the lung. Identities of cell types in the normal lung are captured in individual cell cards with delineation of function, markers, developmental lineages, heterogeneity, regenerative potential, disease links, and key experimental tools. This publication will serve as the starting point of a live, up-to-date guide for lung research at https://www.lungmap.net/cell-cards/. We hope that Lung CellCards will promote the community-wide effort to establish, maintain, and restore respiratory health.
引用
收藏
页码:112 / +
页数:37
相关论文
共 301 条
[51]   Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting [J].
Cohen, Merav ;
Giladi, Amir ;
Gorki, Anna-Dorothea ;
Solodkin, Dikla Gelbard ;
Zada, Mor ;
Hladik, Anastasiya ;
Miklosi, Andras ;
Salame, Tomer-Meir ;
Halpern, Keren Bahar ;
David, Eyal ;
Itzkovitz, Shalev ;
Harkany, Tibor ;
Knapp, Sylvia ;
Amit, Ido .
CELL, 2018, 175 (04) :1031-+
[52]   A committed precursor to innate lymphoid cells [J].
Constantinides, Michael G. ;
McDonald, Benjamin D. ;
Verhoef, Philip A. ;
Bendelac, Albert .
NATURE, 2014, 508 (7496) :397-+
[53]   Signaling Pathways in the Specification of Arteries and Veins [J].
Corada, Monica ;
Morini, Marco Francesco ;
Dejana, Elisabetta .
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2014, 34 (11) :2372-2377
[54]   PDGFRβ-P2A-CreERT2 mice: a genetic tool to target pericytes in angiogenesis [J].
Cuervo, Henar ;
Pereira, Brianna ;
Nadeem, Taliha ;
Lin, Mika ;
Lee, Frances ;
Kitajewski, Jan ;
Lin, Chyuan-Sheng .
ANGIOGENESIS, 2017, 20 (04) :655-662
[55]   Lymphatic Vessels: The Next Frontier in Lung Transplant [J].
Cui, Ye ;
Liu, Kaifeng ;
Lamattina, Anthony Mark ;
Visner, Gary ;
El-Chemaly, Souheil .
ANNALS OF THE AMERICAN THORACIC SOCIETY, 2017, 14 :S226-S232
[56]   Adventitial Stromal Cells Define Group 2 Innate Lymphoid Cell Tissue Niches [J].
Dahlgren, Madelene W. ;
Jones, Stephen W. ;
Cautivo, Kelly M. ;
Dubinin, Alexandra ;
Ortiz-Carpena, Jorge F. ;
Farhat, Sepideh ;
Yu, Kevin S. ;
Lee, Katharine ;
Wang, Chaoqun ;
Molofsky, Anna, V ;
Tward, Aaron D. ;
Krummel, Matthew F. ;
Peng, Tien ;
Molofsky, Ari B. .
IMMUNITY, 2019, 50 (03) :707-+
[57]   Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling [J].
de la Cuesta, Fernando ;
Passalacqua, Ilaria ;
Rodor, Julie ;
Bhushan, Raghu ;
Denby, Laura ;
Baker, Andrew H. .
CELL COMMUNICATION AND SIGNALING, 2019, 17 (01)
[58]   Mast Cells Interact with Endothelial Cells to Accelerate In Vitro Angiogenesis [J].
de Souza Junior, Devandir Antonio ;
Mazucato, Vivian Marino ;
Santana, Ana Carolina ;
Oliver, Constance ;
Jamur, Maria Celia .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 18 (12)
[59]   Transcriptional Control of Endothelial Cell Development [J].
De Val, Sarah ;
Black, Brian L. .
DEVELOPMENTAL CELL, 2009, 16 (02) :180-195
[60]   A Single-Cell Atlas of the Human Healthy Airways [J].
Deprez, Marie ;
Zaragosi, Laure-Emmanuelle ;
Truchi, Marin ;
Becavin, Christophe ;
Garcia, Sandra Ruiz ;
Arguel, Marie-Jeanne ;
Plaisant, Magali ;
Magnone, Virginie ;
Lebrigand, Kevin ;
Abelanet, Sophie ;
Brau, Frederic ;
Paquet, Agnes ;
Pe'er, Dana ;
Marquette, Charles-Hugo ;
Leroy, Sylvie ;
Barbry, Pascal .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2020, 202 (12) :1636-1645