The complete mitochondrial genome of the spotted steed, Hemibarbus maculatus (Teleostei, Cypriniformes)

被引：41
作者：
Li, Ping [1 ]
Xu, Dandan [1 ]
Peng, Zuogang [1 ]
Zhang, Yaoguang [1 ]
机构：
[1] Southwest Univ, Sch Life Sci, Key Lab Freshwater Fish Reprod & Dev, Key Lab Aquat Sci Chongqing,Minist Educ, Chongqing 400715, Peoples R China
来源：
MITOCHONDRIAL DNA | 2012年 / 23卷 / 01期
基金：
中国国家自然科学基金;
关键词：
Spotted steed; Cypriniformes; mitogenome; phylogeny; PHYLOGENY; CATFISH;
D O I：
10.3109/19401736.2011.643880
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
The complete mitogenome sequence of the spotted steed (Hemibarbus maculatus) was determined using long PCR reactions. The genome is 16,611 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition of H. maculatus was similar to that of most other vertebrates. The base composition of H-strand in descending order is A (29.16%), C (27.41%), T (25.93%), and G (17.50%), with an AT content of 55.09%. The Kimura two-parameter distances between mitogenome sequences of H. maculatus and Hemibarbus labeo, Hemibarbus barbus, Hemibarbus longirostris, Hemibarbus mylodon were 2.09%, 2.35%, 12.77%, and 13.92%, respectively. The phylogenetic relationships among the five Hemibarbus species based on the whole mitogenome sequence data were (((H. barbus, H. labeo), H. maculatus), (H. longirostris, H. mylodon)).
引用
收藏
页码：34 / 36
页数：3
相关论文
共 10 条
[1]   Complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae):: Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes [J].
Kartavtsev, Yuri P. ;
Jung, Sang-Oun ;
Lee, Young-Mi ;
Byeon, Hwa-Kun ;
Lee, Jae-Seong .
GENE, 2007, 396 (01) :13-27
[2]   Phylogenetic relationships among three new Hemibarbus mitogenome sequences belonging to the subfamily Gobioninae (Teleostei, Cypriniformes, and Cyprinidae) [J].
Kim, Keun-Yong ;
Lim, Yoon Hee ;
Bang, In-Chul ;
Nam, Yoon Kwon .
MITOCHONDRIAL DNA, 2009, 20 (5-6) :119-125
[3]  
Kottelat M, 2006, FISHES MONGOLIA
[4]   Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes):: First example of transfer RNA gene rearrangements in bony fishes [J].
Miya, M ;
Nishida, M .
MARINE BIOTECHNOLOGY, 1999, 1 (05) :416-426
[5]   The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Silurifonnes: Cranoglanididae) and the phylogeny of otophysan fishes [J].
Peng, Zuogang ;
Wang, Jun ;
He, Shunping .
GENE, 2006, 376 (02) :290-297
[6]   MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods [J].
Tamura, Koichiro ;
Peterson, Daniel ;
Peterson, Nicholas ;
Stecher, Glen ;
Nei, Masatoshi ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2011, 28 (10) :2731-2739
[7]   Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae) [J].
Tang, Kevin L. ;
Agnew, Mary K. ;
Chen, Wei-Jen ;
Hirt, M. Vincent ;
Raley, Morgan E. ;
Sado, Tetsuya ;
Schneider, Leah M. ;
Yang, Lei ;
Bart, Henry L. ;
He, Shunping ;
Liu, Huanzhang ;
Miya, Masaki ;
Saitoh, Kenji ;
Simons, Andrew M. ;
Wood, Robert M. ;
Mayden, Richard L. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2011, 61 (01) :103-124
[8]   Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): Insight into its phylogenic position within Cyprinidae [J].
Wang, Chenghui ;
Chen, Qin ;
Lu, Guoqing ;
Xu, Jiawei ;
Yang, Qinling ;
Li, Sifa .
GENE, 2008, 424 (1-2) :96-101
[9]   The complete mitochondrial genome of Chinese rare minnow, Gobiocypris rarus (Teleostei: Cypriniformes) [J].
Wang, Jinjin ;
Li, Ping ;
Zhang, Yaoguang ;
Peng, Zuogang .
MITOCHONDRIAL DNA, 2011, 22 (5-6) :178-180
[10]   Automatic annotation of organellar genomes with DOGMA [J].
Wyman, SK ;
Jansen, RK ;
Boore, JL .
BIOINFORMATICS, 2004, 20 (17) :3252-3255
1