APPLICATIONS OF NEXT-GENERATION SEQUENCING IN PLANT BIOLOGY

被引:192
作者
Egan, Ashley N. [1 ]
Schlueter, Jessica [2 ]
Spooner, David M. [3 ]
机构
[1] E Carolina Univ, Dept Biol, Greenville, NC 27858 USA
[2] Univ N Carolina, Dept Bioinformat & Genom, Charlotte, NC 28223 USA
[3] Univ Wisconsin, USDA, ARS, Dept Hort, Madison, WI 53706 USA
基金
美国国家科学基金会;
关键词
development; DNA sequencing; genomics; next-generation sequencing; plant biology; RNA-SEQ; ENRICHMENT STRATEGIES; GENOMICS; REVEALS; BIOINFORMATICS; CHALLENGES; GALAXY; GENES;
D O I
10.3732/ajb.1200020
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The last several years have seen revolutionary advances in DNA sequencing technologies with the advent of next-generation sequencing (NGS) techniques. NGS methods now allow millions of bases to be sequenced in one round, at a fraction of the cost relative to traditional Sanger sequencing. As costs and capabilities of these technologies continue to improve, we are only beginning to see the possibilities of NGS platforms, which are developing in parallel with online availability of a wide range of biological data sets and scientific publications and allowing us to address a variety of questions not possible before. As techniques and data sets continue to improve and grow, we are rapidly moving to the point where every organism, not just select "model organisms", is open to the power of NGS. This volume presents a brief synopsis of NGS technologies and the development of exemplary applications of such methods in the fields of molecular marker development, hybridization and introgression, transcriptome investigations, phylogenetic and ecological studies, polyploid genetics, and applications for large genebank collections.
引用
收藏
页码:175 / 185
页数:11
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