On the role of electrostatics in protein-protein interactions

被引:129
|
作者
Zhang, Zhe [1 ]
Witham, Shawn [1 ]
Alexov, Emil [1 ]
机构
[1] Clemson Univ, Dept Phys, Clemson, SC 29634 USA
基金
美国国家卫生研究院;
关键词
GENERALIZED BORN MODELS; POISSON-BOLTZMANN EQUATION; ADAPTIVE FAST MULTIPOLE; PH-DEPENDENCE; MOLECULAR-DYNAMICS; MISSENSE MUTATIONS; EXPLICIT SOLVENT; SALT DEPENDENCE; LIGAND-BINDING; CONFORMATIONAL FLEXIBILITY;
D O I
10.1088/1478-3975/8/3/035001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The role of electrostatics in protein-protein interactions and binding is reviewed in this paper. A brief outline of the computational modeling, in the framework of continuum electrostatics, is presented and the basic electrostatic effects occurring upon the formation of the complex are discussed. The effect of the salt concentration and pH of the water phase on protein-protein binding free energy is demonstrated which indicates that the increase of the salt concentration tends to weaken the binding, an observation that is attributed to the optimization of the charge-charge interactions across the interface. It is pointed out that the pH-optimum (pH of optimal binding affinity) varies among the protein-protein complexes, and perhaps is a result of their adaptation to particular subcellular compartments. The similarities and differences between hetero- and homo-complexes are outlined and discussed with respect to the binding mode and charge complementarity.
引用
收藏
页数:10
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