Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU

被引:23
作者
Blauenburg, Bastian [1 ]
Mielcarek, Andreas [1 ]
Altegoer, Florian [2 ]
Fage, Christopher D. [1 ]
Linne, Uwe [1 ]
Bange, Gert [1 ,2 ]
Marahiel, Mohamed A. [1 ]
机构
[1] Philipps Univ Marburg, Dept Chem, Biochem, Hans Meerwein Str 4, D-35043 Marburg, Germany
[2] Philipps Univ Marburg, LOEWE Ctr Synthet Microbiol, D-35043 Marburg, Germany
关键词
FE-S CLUSTER; IRON-SULFUR CLUSTERS; ESCHERICHIA-COLI; YEAST FRATAXIN; BIOGENESIS; HOMOLOG; CYAY; GENE; BIOSYNTHESIS; SEQUENCE;
D O I
10.1371/journal.pone.0158749
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The biosynthesis of iron sulfur (Fe-S) clusters in Bacillus subtilis is mediated by a SUF-type gene cluster, consisting of the cysteine desulfurase SufS, the scaffold protein SufU, and the putative chaperone complex SufB/SufC/SufD. Here, we present the high-resolution crystal structure of the SufS homodimer in its product-bound state (i.e., in complex with pyrodoxal-5'-phosphate, alanine, Cys361-persulfide). By performing hydrogen/deuterium exchange (H/DX) experiments, we characterized the interaction of SufS with SufU and demonstrate that SufU induces an opening of the active site pocket of SufS. Recent data indicate that frataxin could be involved in Fe-S cluster biosynthesis by facilitating iron incorporation. H/DX experiments show that frataxin indeed interacts with the SufS/SufU complex at the active site. Our findings deepen the current understanding of Fe-S cluster biosynthesis, a complex yet essential process, in the model organism B. subtilis.
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页数:20
相关论文
共 68 条
[1]   The Nfs1 interacting protein Isd11 has an essential role in Fe/S cluster biogenesis in mitochondria [J].
Adam, AC ;
Bornhövd, C ;
Prokisch, H ;
Neupert, W ;
Hell, K .
EMBO JOURNAL, 2006, 25 (01) :174-183
[2]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[3]   A structural approach to understanding the iron-binding properties of phylogenetically different frataxins [J].
Adinolfi, S ;
Trifuoggi, M ;
Politou, AS ;
Martin, S ;
Pastore, A .
HUMAN MOLECULAR GENETICS, 2002, 11 (16) :1865-1877
[4]   Bacterial frataxin CyaY is the gatekeeper of iron-sulfur cluster formation catalyzed by IscS [J].
Adinolfi, Salvatore ;
Iannuzzi, Clara ;
Prischi, Filippo ;
Pastore, Chiara ;
Iametti, Stefania ;
Martin, Stephen R. ;
Bonomi, Franco ;
Pastore, Annalisa .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (04) :390-396
[5]   IscU as a scaffold for iron-sulfur cluster biosynthesis: Sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU [J].
Agar, JN ;
Krebs, C ;
Frazzon, J ;
Huynh, BH ;
Dean, DR ;
Johnson, MK .
BIOCHEMISTRY, 2000, 39 (27) :7856-7862
[6]  
Agar JN, 2000, BIOCHEMISTRY
[7]   The Frataxin Homologue Fra Plays a Key Role in Intracellular Iron Channeling in Bacillus subtilis [J].
Albrecht, Alexander G. ;
Landmann, Hannes ;
Nette, David ;
Burghaus, Olaf ;
Peuckert, Florian ;
Seubert, Andreas ;
Miethke, Marcus ;
Marahiel, Mohamed A. .
CHEMBIOCHEM, 2011, 12 (13) :2052-2061
[8]   Mechanistic characterization of sulfur transfer from cysteine desulfurase SufS to the iron-sulfur scaffold SufU in Bacillus subtilis [J].
Albrecht, Alexander G. ;
Peuckert, Florian ;
Landmann, Hannes ;
Miethke, Marcus ;
Seubert, Andreas ;
Marahiel, Mohamed A. .
FEBS LETTERS, 2011, 585 (03) :465-470
[9]   SufU Is an Essential Iron-Sulfur Cluster Scaffold Protein in Bacillus subtilis [J].
Albrecht, Alexander G. ;
Netz, Daili J. A. ;
Miethke, Marcus ;
Pierik, Antonio J. ;
Burghaus, Olaf ;
Peuckert, Florian ;
Lill, Roland ;
Marahiel, Mohamed A. .
JOURNAL OF BACTERIOLOGY, 2010, 192 (06) :1643-1651
[10]   Biogenesis of iron-sulfur proteins in plants [J].
Balk, J ;
Lobréaux, S .
TRENDS IN PLANT SCIENCE, 2005, 10 (07) :324-331