DNA/RNA chimera templates improve the emission intensity and target the accessibility of silver nanocluster-based sensors for human microRNA detection

被引:19
作者
Shah, Pratik [1 ]
Choi, Suk Won [2 ]
Kim, Ho-jin [2 ]
Cho, Seok Keun [1 ]
Thulstrup, Peter Waaben [3 ]
Bjerrum, Morten Jannik [3 ]
Bhang, Yong-Joo [2 ]
Ahn, Jong Cheol [2 ]
Yang, Seong Wook [1 ]
机构
[1] Univ Copenhagen, UNIK Ctr Synthet Biol, DK-1871 Copenhagen C, Denmark
[2] Seoulin Biosci Co Ltd, Seongnam Si, Gyeonggi Do, South Korea
[3] Univ Copenhagen, Dept Chem, DK-2100 Copenhagen, Denmark
关键词
PANCREATIC-CANCER CELLS; TO-MESENCHYMAL TRANSITION; BREAST-CANCER; RNA/DNA OLIGONUCLEOTIDES; COLORECTAL-CANCER; EXPRESSION; RNA; MIR-200; LET-7A; PROBES;
D O I
10.1039/c5an00093a
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
In recent years microRNAs (miRNAs) have been established as important biomarkers in a variety of diseases including cancer, diabetes, cardiovascular disease, aging, Alzheimer's disease, asthma, autoimmune disease and liver diseases. As a consequence, a variety of monitoring methods for miRNAs have been developed, including a fast and simple method for miRNA detection by exploitation of the unique photoluminescence of DNA-templated silver nanoclusters (DNA/AgNCs). To increase the versatility of the AgNC-based method, we have adopted DNA/RNA chimera templates for AgNC-based probes, allowing response from several human miRNAs which are hardly detectable with DNA-based probes. Here, we demonstrate in detail the power of DNA/RNA chimera/AgNC probes in detecting two human miRNAs, let-7a and miR-200c. The DNA/RNA chimera-based probes are highly efficient to determine the level of miRNAs in several human cell lines.
引用
收藏
页码:3422 / 3430
页数:9
相关论文
共 53 条
[21]   Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants [J].
Khraiwesh, Basel ;
Zhu, Jian-Kang ;
Zhu, Jianhua .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2012, 1819 (02) :137-148
[22]   miR-200 Regulates PDGF-D-Mediated Epithelial-Mesenchymal Transition, Adhesion, and Invasion of Prostate Cancer Cells [J].
Kong, Dejuan ;
Li, Yiwei ;
Wang, Zhiwei ;
Banerjee, Sanjeev ;
Ahmad, Aamir ;
Kim, Hyeong-Reh Choi ;
Sarkar, Fazlul H. .
STEM CELLS, 2009, 27 (08) :1712-1721
[23]  
Kotani H, 1996, MOL GEN GENET, V250, P626
[24]   A ROLE FOR RNA-SYNTHESIS IN HOMOLOGOUS PAIRING EVENTS [J].
KOTANI, H ;
KMIEC, EB .
MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (09) :6097-6106
[25]   Involvement of microRNA-451 in resistance of the MCF-7 breast cancer cells to chemotherapeutic drug doxorubicin [J].
Kovalchuk, Olga ;
Filkowski, Jody ;
Meservy, James ;
IInytskyy, Yaroslav ;
Tryndyak, Volodymyr P. ;
Chekhun, Vasyl' F. ;
Pogribny, Igor P. .
MOLECULAR CANCER THERAPEUTICS, 2008, 7 (07) :2152-2159
[26]   Role of microRNAs and other sRNAs of plants in their changing environments [J].
Kruszka, Katarzyna ;
Pieczynski, Marcin ;
Windels, David ;
Bielewicz, Dawid ;
Jarmolowski, Artur ;
Szweykowska-Kulinska, Zofia ;
Vazquez, Franck .
JOURNAL OF PLANT PHYSIOLOGY, 2012, 169 (16) :1664-1672
[27]   Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications [J].
Kurn, N ;
Chen, PC ;
Heath, JD ;
Kopf-Sill, A ;
Stephens, KM ;
Wang, SL .
CLINICAL CHEMISTRY, 2005, 51 (10) :1973-1981
[28]  
Lai Li-Wen, 2002, Kidney Int, V61, pS47
[29]   Up-regulation of miR-200 and let-7 by Natural Agents Leads to the Reversal of Epithelial-to-Mesenchymal Transition in Gemcitabine-Resistant Pancreatic Cancer Cells [J].
Li, Yiwei ;
VandenBoom, Timothy G., II ;
Kong, Dejuan ;
Wang, Zhiwei ;
Ali, Shadan ;
Philip, Philip A. ;
Sarkar, Fazlul H. .
CANCER RESEARCH, 2009, 69 (16) :6704-6712
[30]   TP53 and Let-7a micro-RNA Regulate K-Ras Activity in HCT116 Colorectal Cancer Cells [J].
Luu, Carrie ;
Heinrich, Eileen L. ;
Duldulao, Marjun ;
Arrington, Amanda K. ;
Fakih, Marwan ;
Garcia-Aguilar, Julio ;
Kim, Joseph .
PLOS ONE, 2013, 8 (08)