Some mathematical models of intermolecular autophosphorylation

被引:4
作者
Doherty, Kevin [1 ,2 ,3 ]
Meere, Martin [1 ]
Piiroinen, Petri T. [1 ]
机构
[1] Natl Univ Ireland, Sch Math Stat & Appl Math, Galway, Ireland
[2] AgroParisTech, CRNH IdF, UMR914, Nutr Physiol & Ingest Behav, F-75005 Paris, France
[3] INRA, CRNH IdF, Nutr Physiol & Ingest Behav UMR914, F-75005 Paris, France
关键词
Cell biology; Enzyme kinetics; Dynamical systems; Differential equations; EPIDERMAL-GROWTH-FACTOR; AURORA-B KINASE; PROTEIN-TYROSINE KINASE; MULTISITE PHOSPHORYLATION; CELLULAR-REGULATION; KINETIC-ANALYSIS; ATM; ACTIVATION; SITES; IDENTIFICATION;
D O I
10.1016/j.jtbi.2015.01.015
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Intermolecular autophosphorylation refers to the process whereby a molecule of an enzyme phosphorylates another molecule of the same enzyme. The enzyme thereby catalyses its own phosphorylation. In the present paper, we develop two generic models of intermolecular autophosphorylation that also include dephosphorylation by a phosphatase of constant concentration. The first of these, a solely time-dependent model, is written as one ordinary differential equation that relies upon mass-action and Michaelis-Menten kinetics. Beginning with the enzyme in its dephosphorylated state, it predicts a lag before the enzyme becomes significantly phosphorylated, for suitable parameter values. It also predicts that there exists a threshold concentration for the phosphorylation of enzyme and that for suitable parameter values, a continuous or discontinuous switch in the phosphorylation of enzyme are possible. The model developed here has the advantage that it is relatively easy to analyse compared with most existing models for autophosphorylation and can qualitatively describe many different systems. We also extend our time-dependent model of autophosphorylation to include a spatial dependence, as well as localised binding reactions. This spatio-temporal model consists of a system of partial differential equations that describe a soluble autophosphorylating enzyme in a spherical geometry. We use the spatio-temporal model to describe the phosphorylation of an enzyme throughout the cell due to an increase in local concentration by binding. Using physically realistic values for model parameters, our results provide a proof-of-concept of the process of activation by local concentration and suggest that, in the presence of a phosphatase, this activation can be irreversible. (C) 2015 Elsevier Ltd. All rights reserved.
引用
收藏
页码:27 / 38
页数:12
相关论文
共 52 条
  • [1] Perturbation of Incenp function impedes anaphase chromatid movements and chromosomal passenger protein flux at centromeres
    Ahonen, Leena J.
    Kukkonen, Anu M.
    Pouwels, Jeroen
    Bolton, Margaret A.
    Jingle, Christopher D.
    Stukenberg, P. Todd
    Kallio, Marko J.
    [J]. CHROMOSOMA, 2009, 118 (01) : 71 - 84
  • [2] CELLULAR CONCENTRATIONS OF ENZYMES AND THEIR SUBSTRATES
    ALBE, KR
    BUTLER, MH
    WRIGHT, BE
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1990, 143 (02) : 163 - 195
  • [3] Requirement of protein phosphatase 5 in DNA-damage-induced ATM activation
    Ali, A
    Zhang, J
    Bao, SD
    Liu, I
    Otterness, D
    Dean, NM
    Abraham, RT
    Wang, XF
    [J]. GENES & DEVELOPMENT, 2004, 18 (03) : 249 - 254
  • [4] [Anonymous], 2021, MATLAB version 7.10.0
  • [5] DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation
    Bakkenist, CJ
    Kastan, MB
    [J]. NATURE, 2003, 421 (6922) : 499 - 506
  • [6] The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters
    Bar-Even, Arren
    Noor, Elad
    Savir, Yonatan
    Liebermeister, Wolfram
    Davidi, Dan
    Tawfik, Dan S.
    Milo, Ron
    [J]. BIOCHEMISTRY, 2011, 50 (21) : 4402 - 4410
  • [7] ACTIVATION OF AN S6/H4 KINASE (PAK-65) FROM HUMAN PLACENTA BY INTRAMOLECULAR AND INTERMOLECULAR AUTOPHOSPHORYLATION
    BENNER, GE
    DENNIS, PB
    MASARACCHIA, RA
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1995, 270 (36) : 21121 - 21128
  • [8] High-affinity binders selected from designed ankyrin repeat protein libraries
    Binz, HK
    Amstutz, P
    Kohl, A
    Stumpp, MT
    Briand, C
    Forrer, P
    Grütter, MG
    Plückthun, A
    [J]. NATURE BIOTECHNOLOGY, 2004, 22 (05) : 575 - 582
  • [9] Phosphorylation of the carboxyl terminus of inner centromere protein (INCENP) by the Aurora B kinase stimulates Aurora B kinase activity
    Bishop, JD
    Schumacher, JM
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (31) : 27577 - 27580
  • [10] Stochastic Bistability and Bifurcation in a Mesoscopic Signaling System with Autocatalytic Kinase
    Bishop, Lisa M.
    Qian, Hong
    [J]. BIOPHYSICAL JOURNAL, 2010, 98 (01) : 1 - 11