SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction

被引:21
作者
Huang, Yihan [1 ]
Harris, Bradley S. [2 ]
Minami, Shiaki A. [2 ]
Jung, Seongwon [2 ]
Shah, Priya S. [2 ,3 ]
Nandi, Somen [2 ,4 ]
McDonald, Karen A. [2 ,4 ]
Faller, Roland [2 ]
机构
[1] Univ Calif Davis, Dept Mat Sci, Davis, CA USA
[2] Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA
[3] Univ Calif Davis, Dept Microbiol & Mol Genet, Davis, CA USA
[4] Univ Calif Davis, Global HealthShare Initiat, Davis, CA USA
基金
美国国家科学基金会;
关键词
ANTIBODY-BINDING; GLYCOSYLATION; PROTEIN; RECOGNITION; DYNAMICS; LIGAND;
D O I
10.1016/j.bpj.2021.12.002
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well.
引用
收藏
页码:79 / 90
页数:12
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