"Pnicogen bonds" or "chalcogen bonds": exploiting the effect of substitution on the formation of P•••Se noncovalent bonds

被引:58
作者
Shukla, Rahul [1 ]
Chopra, Deepak [1 ]
机构
[1] Indian Inst Sci Educ & Res Bhopal, Crystallog & Crystal Chem Lab, Dept Chem, Bhopal 462066, Madhya Pradesh, India
关键词
CAMBRIDGE STRUCTURAL DATABASE; ELECTRON-DENSITY DISTRIBUTION; INTERMOLECULAR INTERACTIONS; DI(TERTIARY PHOSPHINES); MOLECULAR-INTERACTIONS; HALOGEN BONDS; SIGMA-HOLES; HYDROGEN; CHARGE; CHEMISTRY;
D O I
10.1039/c6cp01703g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this article, we have analyzed the nature and characteristics of P center dot center dot center dot Se noncovalent interactions by studying the effect of substitution on XH2P center dot center dot center dot SeH2, H3P center dot center dot center dot SeHX and XH2P center dot center dot center dot SeHX (X= -H, -F, -CH3, -CF3, -Cl, -OH, -OCH3, -NH2, -NHCH3, and -CN) as our systems of interest at MP2/aug-cc-pVDZ level of theory. Binding energy calculations depict that binding energy increases in the order XH2P center dot center dot center dot SeH2 < H3P center dot center dot center dot SeHX < XH2P center dot center dot center dot SeHX with the nature of the substituent having a direct effect on the strength of the interactions. P center dot center dot center dot Se contacts as short as 2.52 angstrom were observed and analyzed in our study. The energy values for P center dot center dot center dot Se contacts were found to exist in the range of -1.20 kcal mol(-1) to -7.89 kcal mol(-1). The topological analysis confirms the presence of P center dot center dot center dot Se contacts in all the complexes with characteristics similar to hydrogen bonds. NBO analysis helped in categorizing these interactions into pnicogen and chalcogen bonds, depending on the strength of P(lp) to sigma(star)(Se-X) orbitals or Se(lp) to sigma(star)(P-X) orbitals.
引用
收藏
页码:13820 / 13829
页数:10
相关论文
共 102 条
[1]   Effects of Charge and Substituent on the S•••N Chalcogen Bond [J].
Adhikari, Upendra ;
Scheiner, Steve .
JOURNAL OF PHYSICAL CHEMISTRY A, 2014, 118 (17) :3183-3192
[2]   Sensitivity of pnicogen, chalcogen, halogen and H-bonds to angular distortions [J].
Adhikari, Upendra ;
Scheiner, Steve .
CHEMICAL PHYSICS LETTERS, 2012, 532 :31-35
[3]   Comparison of P•••D (D = P,N) with other noncovalent bonds in molecular aggregates [J].
Adhikari, Upendra ;
Scheiner, Steve .
JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (18)
[4]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[5]  
[Anonymous], 2013, TK Gristmill Software
[6]   Definition of the hydrogen bond (IUPAC Recommendations 2011) [J].
Arunan, Elangannan ;
Desiraju, Gautam R. ;
Klein, Roger A. ;
Sadlej, Joanna ;
Scheiner, Steve ;
Alkorta, Ibon ;
Clary, David C. ;
Crabtree, Robert H. ;
Dannenberg, Joseph J. ;
Hobza, Pavel ;
Kjaergaard, Henrik G. ;
Legon, Anthony C. ;
Mennucci, Benedetta ;
Nesbitt, David J. .
PURE AND APPLIED CHEMISTRY, 2011, 83 (08) :1637-1641
[7]   Halogen bonds in biological molecules [J].
Auffinger, P ;
Hays, FA ;
Westhof, E ;
Ho, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (48) :16789-16794
[8]   ATOMS IN MOLECULES [J].
BADER, RFW .
ACCOUNTS OF CHEMICAL RESEARCH, 1985, 18 (01) :9-15
[9]   Bond Paths Are Not Chemical Bonds [J].
Bader, Richard F. W. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (38) :10391-10396
[10]   Crystal Structure Studies on Some of Benzamide Ring Substituted Isoselenazolones and Symmetric Diaryl Monoselenides Derived from Benzamides [J].
Balkrishna, Shah Jaimin ;
Shukla, Rahul ;
Jasinski, Jerry P. ;
Kumar, Sangit .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES INDIA SECTION A-PHYSICAL SCIENCES, 2014, 84 (02) :165-177