Striking antibody evasion manifested by the Omicron variant of SARS-CoV-2

被引:952
作者
Liu, Lihong [1 ]
Iketani, Sho [1 ,2 ]
Guo, Yicheng [1 ]
Chan, Jasper F-W [3 ,4 ]
Wang, Maple [1 ]
Liu, Liyuan [5 ]
Luo, Yang [1 ]
Chu, Hin [3 ,4 ]
Huang, Yiming [5 ]
Nair, Manoj S. [1 ]
Yu, Jian [1 ]
Chik, Kenn K-H [4 ]
Yuen, Terrence T-T [3 ]
Yoon, Chaemin [3 ]
To, Kelvin K-W [3 ,4 ]
Chen, Honglin [3 ,4 ]
Yin, Michael T. [1 ,6 ]
Sobieszczyk, Magdalena E. [1 ,6 ]
Huang, Yaoxing [1 ]
Wang, Harris H. [5 ]
Sheng, Zizhang [1 ]
Yuen, Kwok-Yung [3 ,4 ]
Ho, David D. [1 ,2 ,6 ]
机构
[1] Columbia Univ, Aaron Diamond AIDS Res Ctr, Vagelos Coll Phys & Surg, New York, NY 10032 USA
[2] Columbia Univ, Dept Microbiol & Immunol, Vagelos Coll Phys & Surg, New York, NY 10032 USA
[3] Univ Hong Kong, State Key Lab Emerging Infect Dis, Carol Yu Ctr Infect, Dept Microbiol,Li Ka Shing Fac Med, Hong Kong, Peoples R China
[4] Ctr Virol Vaccinol & Therapeut, Hong Kong, Peoples R China
[5] Columbia Univ, Dept Syst Biol, Vagelos Coll Phys & Surg, New York, NY USA
[6] Columbia Univ, Dept Med, Div Infect Dis, Vagelos Coll Phys & Surg, New York, NY 10032 USA
基金
美国国家科学基金会;
关键词
D O I
10.1038/s41586-021-04388-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The B.1.1.529/Omicron variant of SARS-CoV-2 was only recently detected in southern Africa, but its subsequent spread has been extensive, both regionally and globally(1). It is expected to become dominant in the coming weeks(2), probably due to enhanced transmissibility. A striking feature of this variant is the large number of spike mutations(3) that pose a threat to the efficacy of current COVID-19 vaccines and antibody therapies(4). This concern is amplified by the findings of our study. Here we found that B.1.1.529 is markedly resistant to neutralization by serum not only from patients who recovered from COVID-19, but also from individuals who were vaccinated with one of the four widely used COVID-19 vaccines. Even serum from individuals who were vaccinated and received a booster dose of mRNA-based vaccines exhibited substantially diminished neutralizing activity against B.1.1.529. By evaluating a panel of monoclonal antibodies against all known epitope clusters on the spike protein, we noted that the activity of 17 out of the 19 antibodies tested were either abolished or impaired, including ones that are currently authorized or approved for use in patients. Moreover, we also identified four new spike mutations (S371L, N440K, G446S and Q493R) that confer greater antibody resistance on B.1.1.529. The Omicron variant presents a serious threat to many existing COVID-19 vaccines and therapies, compelling the development of new interventions that anticipate the evolutionary trajectory of SARS-CoV-2.
引用
收藏
页码:676 / +
页数:19
相关论文
共 48 条
[11]   Comparative tropism, replication kinetics, and cell damage profiling of SARS-CoV-2 and SARS-CoV with implications for clinical manifestations, transmissibility, and laboratory studies of COVID-19: an observational study [J].
Chu, Hin ;
Chan, Jasper Fuk-Woo ;
Yuen, Terrence Tsz-Tai ;
Shuai, Huiping ;
Yuan, Shuofeng ;
Wang, Yixin ;
Hu, Bingjie ;
Yip, Cyril Chik-Yan ;
Tsang, Jessica Oi-Ling ;
Huang, Xiner ;
Chai, Yue ;
Yang, Dong ;
Hou, Yuxin ;
Chik, Kenn Ka-Heng ;
Zhang, Xi ;
Fung, Agnes Yim-Fong ;
Tsoi, Hoi-Wah ;
Cai, Jian-Piao ;
Chan, Wan-Mui ;
Ip, Jonathan Daniel ;
Chu, Allen Wing-Ho ;
Zhou, Jie ;
Lung, David Christopher ;
Kok, Kin-Hang ;
To, Kelvin Kai-Wang ;
Tsang, Owen Tak-Yin ;
Chan, Kwok-Hung ;
Yuen, Kwok-Yung .
LANCET MICROBE, 2020, 1 (01) :E14-E23
[12]   Neutralising antibody titres as predictors of protection against SARS-CoV-2 variants and the impact of boosting: a meta-analysis [J].
Cromer, Deborah ;
Steain, Megan ;
Reynaldi, Arnold ;
Schlub, Timothy E. ;
Wheatley, Adam K. ;
Juno, Jennifer A. ;
Kent, Stephen J. ;
Triccas, James A. ;
Khoury, David S. ;
Davenport, Miles P. .
LANCET MICROBE, 2022, 3 (01) :E52-E61
[13]   Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England [J].
Davies, Nicholas G. ;
Abbott, Sam ;
Barnard, Rosanna C. ;
Jarvis, Christopher, I ;
Kucharski, Adam J. ;
Munday, James D. ;
Pearson, Carl A. B. ;
Russell, Timothy W. ;
Tully, Damien C. ;
Washburne, Alex D. ;
Wenseleers, Tom ;
Gimma, Amy ;
Waites, William ;
Wong, Kerry L. M. ;
van Zandvoort, Kevin ;
Silverman, Justin D. ;
Diaz-Ordaz, Karla ;
Keogh, Ruth ;
Eggo, Rosalind M. ;
Funk, Sebastian ;
Jit, Mark ;
Atkins, Katherine E. ;
Edmunds, W. John .
SCIENCE, 2021, 372 (6538) :149-+
[14]  
Doria-Rose, BOOSTER MRNA 1273 VA, DOI [10.1101/2021.12.15.21267805(2021), DOI 10.1101/2021.12.15.21267805(2021)]
[15]  
Faria NR, 2021, SCIENCE, V372, P815, DOI [10.1126/science.abh2644Article, 10.1126/science.abh2644, 10.1101/2021.02.26.21252554]
[16]  
Garcia-Beltran, CELL, DOI DOI 10.1016/J.CELL.2021.12.033(2022
[17]  
Grabowski F., OMICRON STRAIN SPREA, DOI [10.1101/2021.12.08.21267494(2021, DOI 10.1101/2021.12.08.21267494(2021]
[18]   Vaccine Breakthrough Infections with SARS-CoV-2 Variants [J].
Hacisuleyman, Ezgi ;
Hale, Caryn ;
Saito, Yuhki ;
Blachere, Nathalie E. ;
Bergh, Marissa ;
Conlon, Erin G. ;
Schaefer-Babajew, Dennis J. ;
DaSilva, Justin ;
Muecksch, Frauke ;
Gaebler, Christian ;
Lifton, Richard ;
Nussenzweig, Michel C. ;
Hatziioannou, Theodora ;
Bieniasz, Paul D. ;
Darnell, Robert B. .
NEW ENGLAND JOURNAL OF MEDICINE, 2021, 384 (23) :2212-2218
[19]   Nextstrain: real-time tracking of pathogen evolution [J].
Hadfield, James ;
Megill, Colin ;
Bell, Sidney M. ;
Huddleston, John ;
Potter, Barney ;
Callender, Charlton ;
Sagulenko, Pavel ;
Bedford, Trevor ;
Neher, Richard A. .
BIOINFORMATICS, 2018, 34 (23) :4121-4123
[20]   Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail [J].
Hansen, Johanna ;
Baum, Alina ;
Pascal, Kristen E. ;
Russo, Vincenzo ;
Giordano, Stephanie ;
Wloga, Elzbieta ;
Fulton, Benjamin O. ;
Yan, Ying ;
Koon, Katrina ;
Patel, Krunal ;
Chung, Kyung Min ;
Hermann, Aynur ;
Ullman, Erica ;
Cruz, Jonathan ;
Rafique, Ashique ;
Huang, Tammy ;
Fairhurst, Jeanette ;
Libertiny, Christen ;
Malbec, Marine ;
Lee, Wen-yi ;
Welsh, Richard ;
Farr, Glen ;
Pennington, Seth ;
Deshpande, Dipali ;
Cheng, Jemmie ;
Watty, Anke ;
Bouffard, Pascal ;
Babb, Robert ;
Levenkova, Natasha ;
Chen, Calvin ;
Zhang, Bojie ;
Hernandez, Annabel Romero ;
Saotome, Kei ;
Zhou, Yi ;
Franklin, Matthew ;
Sivapalasingam, Sumathi ;
Lye, David Chien ;
Weston, Stuart ;
Logue, James ;
Haupt, Robert ;
Frieman, Matthew ;
Chen, Gang ;
Olson, William ;
Murphy, Andrew J. ;
Stahl, Neil ;
Yancopoulos, George D. ;
Kyratsous, Christos A. .
SCIENCE, 2020, 369 (6506) :1010-+