Adaptive Switching of Interaction Potentials in the Time Domain: An Extended Lagrangian Approach Tailored to Transmute Force Field to QM/MM Simulations and Back

被引:23
作者
Boeckmann, Marcus [1 ,2 ]
Doltsinis, Nikos L. [1 ,2 ]
Marx, Dominik [3 ]
机构
[1] Univ Munster, Inst Festkorpetheorie, D-48149 Munster, Germany
[2] Univ Munster, Ctr Multiscale Theory & Computat, D-48149 Munster, Germany
[3] Ruhr Univ Bochum, Lehrstuhl Theoret Chem, D-44780 Bochum, Germany
关键词
MOLECULAR-DYNAMICS SIMULATIONS; COMBINED QUANTUM; ENERGY; APPROXIMATION; PROTEINS;
D O I
10.1021/acs.jctc.5b00142
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An extended Lagrangian formalism that allows for a smooth transition between two different descriptions of interactions during a molecular dynamics simulation is presented. This time-adaptive method is particularly useful in the context of multiscale simulation as it provides a sound recipe to switch on demand between different hierarchical levels of theory, for instance between ab initio ("QM") and force field ("MM") descriptions of a given (sub)system in the course of a molecular dynamics simulation. The equations of motion can be integrated straightforwardly using the usual propagators, such as the Verlet algorithm. First test cases include a bath of harmonic oscillators, of which a subset is switched to a different force constant and/or equilibrium position, as well as an all-MM to QM/MM transition in a hydrogen-bonded water dimer. The method is then applied to a smectic 8AB8 liquid crystal and is shown to be able to switch dynamically a preselected 8AB8 molecule from an all -MM to a QM/MM description which involves partition boundaries through covalent bonds. These examples show that the extended Lagrangian approach is not only easy to implement into existing code but that it is also efficient and robust. The technique moreover provides easy access to a conserved energy quantity, also in cases when Nose-Hoover chain thermostatting is used throughout dynamical switching. A simple quadratic driving potential proves to be sufficient to guarantee a smooth transition whose time scale can be easily tuned by varying the fictitious mass parameter associated with the auxiliary variable used to extend the Lagrangian. The method is general and can be applied to time-adaptive switching on demand between two different levels of theory within the framework of hybrid scale-bridging simulations.
引用
收藏
页码:2429 / 2439
页数:11
相关论文
共 53 条
[1]   Chemical potential of liquids and mixtures via adaptive resolution simulation [J].
Agarwal, Animesh ;
Wang, Han ;
Schuette, Christof ;
Delle Site, Luigi .
JOURNAL OF CHEMICAL PHYSICS, 2014, 141 (03)
[2]  
[Anonymous], CAR PARRINELLO MOL D
[3]  
[Anonymous], J PHYS COND MAT
[4]  
[Anonymous], HIERARCHIAL METHODS
[5]  
[Anonymous], J CHEM PHYS
[6]  
[Anonymous], PHYS REV LETT
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]   Atomistic force field for azobenzene compounds adapted for QM/MM simulations with applications to liquids and liquid crystals [J].
Boeckmann, Marcus ;
Peter, Christine ;
Delle Site, Luigi ;
Doltsinis, Nikos L. ;
Kremer, Kurt ;
Marx, Dominik .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (05) :1789-1802
[9]   Multiscale modelling of mesoscopic phenomena triggered by quantum events: light-driven azo-materials and beyond [J].
Boeckmann, Marcus ;
Marx, Dominik ;
Peter, Christine ;
Delle Site, Luigi ;
Kremer, Kurt ;
Doltsinis, Nikos L. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (17) :7604-7621
[10]   Concurrent coupling of length scales: Methodology and application [J].
Broughton, JQ ;
Abraham, FF ;
Bernstein, N ;
Kaxiras, E .
PHYSICAL REVIEW B, 1999, 60 (04) :2391-2403