Rapid detection for infected ascites in cirrhosis using metagenome next-generation sequencing: A case series

被引:4
作者
Li, Beiling [1 ]
He, Qinjun [1 ]
Rui, Yongyu [2 ]
Chen, Yan [3 ]
Jalan, Rajiv [4 ,5 ]
Chen, Jinjun [1 ,6 ]
机构
[1] Southern Med Univ, Nanfang Hosp, Dept Infect Dis, Hepatol Unit, 1838 Guangzhou Dadao Bei, Guangzhou 510515, Peoples R China
[2] Southern Med Univ, Nanfang Hosp, Dept Lab Med, Guangzhou, Peoples R China
[3] BGI Shenzhen, Clin Lab BGI Hlth, Shenzhen, Peoples R China
[4] UCL Med Sch, Inst Liver & Digest Hlth, Liver Failure Grp, London, England
[5] European Fdn Study Chron Liver Failure, Barcelona, Spain
[6] Southern Med Univ, Nanfang Hosp, Zengcheng Branch, Hepatol Unit, Guangzhou, Peoples R China
关键词
cirrhosis; metagenome next-generation sequencing; spontaneous bacterial peritonitis; ASSOCIATION;
D O I
10.1111/liv.15083
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
Empirical antibiotic therapy in patients with spontaneous bacterial peritonitis (SBP) is common as pathogen(s) are identified in only 5%-20% patients using conventional culture-based techniques. Metagenome next-generation sequencing (mNGS) test is a promising approach for the diagnosis of infectious disease. The clinical application of mNGS for infected ascites in cirrhotic patients is rarely reported. Here, we describe three cases to preliminarily explore the potential role of mNGS for microbiological diagnosis of ascites infection in an exploratory manner. The clinical performance of ascites mNGS in cirrhotic patients remains to be further evaluated.
引用
收藏
页码:173 / 179
页数:7
相关论文
共 19 条
  • [1] Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing
    Bittinger, Kyle
    Charlson, Emily S.
    Loy, Elizabeth
    Shirley, David J.
    Haas, Andrew R.
    Laughlin, Alice
    Yi, Yanjie
    Wu, Gary D.
    Lewis, James D.
    Frank, Ian
    Cantu, Edward
    Diamond, Joshua M.
    Christie, Jason D.
    Collman, Ronald G.
    Bushman, Frederic D.
    [J]. GENOME BIOLOGY, 2014, 15 (10): : 487
  • [2] Immune Dysfunction and Infections in Patients With Cirrhosis
    Bonnel, Alexander R.
    Bunchorntavakul, Chalermrat
    Reddy, K. Rajender
    [J]. CLINICAL GASTROENTEROLOGY AND HEPATOLOGY, 2011, 9 (09) : 727 - 738
  • [3] Impact of Cytomegalovirus Infection on the Outcome of Patients With Cirrhosis A Preliminary Study
    Faivre, Morgan
    Cottet, Vanessa
    Bour, Jean-Baptiste
    Richou, Carine
    Valmary-Degano, Severine
    Thiefin, Gerard
    Andreoletti, Laurent
    Geist, Claire
    Schvoerer, Evelyne
    Malve, Brice
    Habersetzer, Francois
    Fafi-Kremer, Samira
    Binquet, Christine
    Jouve, Jean-Louis
    Bronowicki, Jean-Pierre
    Doffoel, Michel
    Hillon, Patrick
    Herbein, Georges
    Monnet, Elisabeth
    Di Martino, Vincent
    Wen, H.
    He, F. P.
    Lu, X. M.
    Hillon, Patrick
    Vuitton, D.
    Faivre, J.
    Cercueil, J. P.
    Cottet, V.
    Delmas, D.
    Ducoroy, P.
    Duvillard, L.
    Guenneugues, M.
    Gueant, J. L.
    Latruffe, N.
    Manfait, M.
    Oudet, P.
    Sockalingum, G.
    Barraud, H.
    Bensenane-Oussalah, M.
    Bernard-Chabert, B.
    Cervoni, J. P.
    Ehrhard, F.
    Feron, T.
    Heurgue, A.
    Minello, A.
    Mouillot, T.
    Nani, A.
    Pillot-Geist, C.
    Thevenot, T.
    Vanlemmens, C.
    [J]. JOURNAL OF CLINICAL GASTROENTEROLOGY, 2019, 53 (03) : 236 - 241
  • [4] Bacterial and fungal infections in acute-on-chronic liver failure: prevalence, characteristics and impact on prognosis
    Fernandez, Javier
    Acevedo, Juan
    Wiest, Reiner
    Gustot, Thierry
    Amoros, Alex
    Deulofeu, Carme
    Reverter, Enric
    Martinez, Javier
    Saliba, Faouzi
    Jalan, Rajiv
    Welzel, Tania
    Pavesi, Marco
    Hernandez-Tejero, Maria
    Gines, Pere
    Arroyo, Vicente
    [J]. GUT, 2018, 67 (10) : 1870 - 1880
  • [5] Clinical course and short-term mortality of cirrhotic patients with infections other than spontaneous bacterial peritonitis
    Fernandez, Javier
    Acevedo, Juan
    Prado, Veronica
    Mercado, Mario
    Castro, Miriam
    Pavesi, Marco
    Arteaga, Mireya
    Sastre, Lydia
    Juanola, Adria
    Gines, Pere
    Arroyo, Vicente
    [J]. LIVER INTERNATIONAL, 2017, 37 (03) : 385 - 395
  • [6] EASL clinical practice guidelines on the management of ascites, spontaneous bacterial peritonitis, and hepatorenal syndrome in cirrhosis European Association for the Study of the Liver
    Gines, Pere
    Angeli, Paolo
    Lenz, Kurt
    Moller, Soren
    Moore, Kevin
    Moreau, Richard
    Merkel, Carlo
    Ring-Larsen, Helmer
    Bernardi, Mauro
    [J]. JOURNAL OF HEPATOLOGY, 2010, 53 (03) : 397 - 417
  • [7] Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids
    Gu, Wei
    Deng, Xianding
    Lee, Marco
    Sucu, Yasemin D.
    Arevalo, Shaun
    Stryke, Doug
    Federman, Scot
    Gopez, Allan
    Reyes, Kevin
    Zorn, Kelsey
    Sample, Hannah
    Yu, Guixia
    Ishpuniani, Gurpreet
    Briggs, Benjamin
    Chow, Eric D.
    Berger, Amy
    Wilson, Michael R.
    Wang, Candace
    Hsu, Elaine
    Miller, Steve
    DeRisi, Joseph L.
    Chiu, Charles Y.
    [J]. NATURE MEDICINE, 2021, 27 (01) : 115 - +
  • [8] Bacterial infections in cirrhosis: A position statement based on the EASL Special Conference 2013
    Jalan, Rajiv
    Fernandez, Javier
    Wiest, Reiner
    Schnabl, Bernd
    Moreau, Richard
    Angeli, Paolo
    Stadlbauer, Vanessa
    Gustot, Thierry
    Bernardi, Mauro
    Canton, Rafael
    Albillos, Agustin
    Lammert, Frank
    Wilmer, Alexander
    Mookerjee, Rajeshwar
    Vila, Jordi
    Garcia-Martinez, Rita
    Wendon, Julia
    Such, Jose
    Cordoba, Juan
    Sanyal, Arun
    Garcia-Tsao, Guadalupe
    Arroyo, Vicente
    Burroughs, Andrew
    Gines, Pere
    [J]. JOURNAL OF HEPATOLOGY, 2014, 60 (06) : 1310 - 1324
  • [9] Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients
    Langelier, Charles
    Zinter, Matt S.
    Kalantar, Katrina
    Yanik, Gregory A.
    Christenson, Stephanie
    O'Donovan, Brian
    White, Corin
    Wilson, Michael
    Sapru, Anil
    Dvorak, Christopher C.
    Miller, Steve
    Chiu, Charles Y.
    DeRisi, Joseph L.
    [J]. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2018, 197 (04) : 524 - 528
  • [10] Spontaneous Fungal Ascites Infection in Patients with Cirrhosis: An Analysis of 10 Cases
    Li, Beiling
    Yang, Chao
    Qian, Zhiping
    Huang, Yan
    Wang, Xianbo
    Zhong, Guotao
    Chen, Jinjun
    [J]. INFECTIOUS DISEASES AND THERAPY, 2021, 10 (02) : 1033 - 1043