Single-molecule approach to molecular biology in living bacterial cells

被引:289
作者
Xie, X. Sunney [1 ]
Choi, Paul J. [1 ]
Li, Gene-Wei [2 ]
Lee, Nam Ki [1 ]
Lia, Giuseppe [1 ]
机构
[1] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[2] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
关键词
living cells; stochastic gene expression; DNA-protein interactions; transcription; translation; replication;
D O I
10.1146/annurev.biophys.37.092607.174640
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Recent developments on fluorescent proteins and microscopy techniques have allowed the probing of single molecules in a living bacteria] cell with high specificity, millisecond time resolution, and nanometer spatial precision. Recording movies and analyzing dynamics of individual macromolecules have brought new insights into the mechanisms of many processes in molecular biology, such is DNA-protein interactions, gene regulation, transcription, translation, and replication, among others. Here we review the key methods of single-molecule detection and highlight numerous examples to illustrate how these experiments are contributing to the quantitative understanding of the fundamental processes in a living cell.
引用
收藏
页码:417 / 444
页数:28
相关论文
共 84 条
  • [1] Alberts B., 2002, Molecular Biology of The Cell, V4th
  • [2] Alon U., 2006, An Introduction to Systems Biology: Design Principles of Biological Circuits
  • [3] An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein
    Ando, R
    Hama, H
    Yamamoto-Hino, M
    Mizuno, H
    Miyawaki, A
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) : 12651 - 12656
  • [4] Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    Azam, TA
    Iwata, A
    Nishimura, A
    Ueda, S
    Ishihama, A
    [J]. JOURNAL OF BACTERIOLOGY, 1999, 181 (20) : 6361 - 6370
  • [5] Chromosome and replisome dynamics in E. coli:: Loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation
    Bates, D
    Kleckner, N
    [J]. CELL, 2005, 121 (06) : 899 - 911
  • [7] Localization of ASH1 mRNA particles in living yeast
    Bertrand, E
    Chartrand, P
    Schaefer, M
    Shenoy, SM
    Singer, RH
    Long, RM
    [J]. MOLECULAR CELL, 1998, 2 (04) : 437 - 445
  • [8] Imaging intracellular fluorescent proteins at nanometer resolution
    Betzig, Eric
    Patterson, George H.
    Sougrat, Rachid
    Lindwasser, O. Wolf
    Olenych, Scott
    Bonifacino, Juan S.
    Davidson, Michael W.
    Lippincott-Schwartz, Jennifer
    Hess, Harald F.
    [J]. SCIENCE, 2006, 313 (5793) : 1642 - 1645
  • [9] A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
    Blainey, PC
    van Oijent, AM
    Banerjee, A
    Verdine, GL
    Xie, XS
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) : 5752 - 5757
  • [10] The complete genome sequence of Escherichia coli K-12
    Blattner, FR
    Plunkett, G
    Bloch, CA
    Perna, NT
    Burland, V
    Riley, M
    ColladoVides, J
    Glasner, JD
    Rode, CK
    Mayhew, GF
    Gregor, J
    Davis, NW
    Kirkpatrick, HA
    Goeden, MA
    Rose, DJ
    Mau, B
    Shao, Y
    [J]. SCIENCE, 1997, 277 (5331) : 1453 - +