Standard apparent reduction potentials for biochemical half reactions as a function of pH and ionic strength

被引:31
作者
Alberty, RA [1 ]
机构
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
关键词
apparent equilibrium constants; standard apparent reduction potentials; standard transformed Gribbs energies of formation; half reactions; redox reactions; nitrogenase; methane monooxygenase;
D O I
10.1006/abbi.2001.2318
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Standard apparent reduction potentials are important because they give a more global view of the driving forces for redox reactions than do the standard transformed Gibbs energies of formation of the reactants. This paper emphasizes the effects of pH on biochemical half reactions in the range pH 5 to 9, but it also shows the effect of ionic strength. These effects can be calculated if the pKs of acid groups in the reactants are known in the range pH 4 to 10. Raising the pH decreases the standard apparent reduction potentials of half reactions when it has an effect, and the slope is proportional to minus one times the ratio of the change in binding of hydrogen ions in the half reaction to the number of electrons transferred. These effects are discussed for 19 biochemical reactions. This effect is most striking for the nitrogenase reaction, where the apparent equilibrium constant is proportional to 10(-10) pH and is unfavorable for nitrogen fixation above pH 8. (C) 2001 Academic Press.
引用
收藏
页码:94 / 109
页数:16
相关论文
共 24 条
[1]   Calculation of standard formation properties of species from standard transformed formation properties of reactants in biochemical reactions at specified pH [J].
Alberty, RA .
JOURNAL OF PHYSICAL CHEMISTRY B, 1999, 103 (01) :261-265
[2]   Effect of pH on protein-ligand equilibria [J].
Alberty, RA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (42) :9929-9934
[3]  
ALBERTY RA, 1994, J BIOL CHEM, V269, P7099
[4]   EQUILIBRIUM CALCULATIONS ON SYSTEMS OF BIOCHEMICAL REACTIONS AT SPECIFIED PH AND PMG [J].
ALBERTY, RA .
BIOPHYSICAL CHEMISTRY, 1992, 42 (02) :117-131
[5]   Apparent equilibrium constants and standard transformed Gibbs energies of biochemical reactions involving carbon dioxide [J].
Alberty, RA .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1997, 348 (01) :116-124
[6]   Calculation of standard transformed Gibbs energies and standard transformed enthalpies of biochemical reactants [J].
Alberty, RA .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1998, 353 (01) :116-130
[7]   BIOCHEMICAL THERMODYNAMICS [J].
ALBERTY, RA .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY, 1994, 1207 (01) :1-11
[8]   Calculation of standard transformed formation properties of biochemical reactants and standard apparent reduction potentials of half reactions [J].
Alberty, RA .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1998, 358 (01) :25-39
[9]   CALCULATION OF TRANSFORMED THERMODYNAMIC PROPERTIES OF BIOCHEMICAL REACTANTS AT SPECIFIED PH AND PMG [J].
ALBERTY, RA .
BIOPHYSICAL CHEMISTRY, 1992, 43 (03) :239-254
[10]   Thermodynamics of the binding of ligands by macromolecules [J].
Alberty, RA .
BIOPHYSICAL CHEMISTRY, 1996, 62 (1-3) :141-159