Virus Structures and Dynamics by Magic-Angle Spinning NMR

被引:13
作者
Porat-Dahlerbruch, Gal [1 ]
Goldbourt, Amir [2 ]
Polenova, Tatyana [1 ,3 ]
机构
[1] Univ Delaware, Dept Chem & Biochem, Newark, DC 19716 USA
[2] Tel Aviv Univ, Sch Chem, IL-6997801 Tel Aviv, Israel
[3] Univ Pittsburgh, Sch Med, Pittsburgh Ctr HIV Prot Interact, Pittsburgh, PA 15261 USA
来源
ANNUAL REVIEW OF VIROLOGY, VOL 8 | 2021年 / 8卷
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
MAS NMR; solid-state NMR; virus assemblies; structure; capsids; dynamics; SOLID-STATE NMR; M2 PROTON CHANNEL; MAGNETIC-RESONANCE SPECTRA; CHEMICAL-SHIFT ASSIGNMENT; INFLUENZA-A; TRANSMEMBRANE DOMAIN; COAT PROTEIN; NUCLEAR-POLARIZATION; LIPID-BILAYERS; FUSION PROTEIN;
D O I
10.1146/annurev-virology-011921-064653
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Techniques for atomic-resolution structural biology have evolved during the past several decades. Breakthroughs in instrumentation, sample preparation, and data analysis that occurred in the past decade have enabled characterization of viruses with an unprecedented level of detail. Here we review the recent advances in magic-angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy for structural analysis of viruses and viral assemblies. MAS NMR is a powerful method that yields information on 3D structures and dynamics in a broad range of experimental conditions. After a brief introduction, we discuss recent structural and functional studies of several viruses investigated with atomic resolution at various levels of structural organization, from individual domains of a membrane protein reconstituted into lipid bilayers to virus-like particles and intact viruses. We present examples of the unique information revealed by MAS NMR about drug binding, conduction mechanisms, interactions with cellular host factors, and DNA packaging in biologically relevant environments that are inaccessible by other methods.
引用
收藏
页码:219 / 237
页数:19
相关论文
共 111 条
  • [11] EXPRESSION OF ANIMAL VIRUS GENOMES
    BALTIMORE, D
    [J]. BACTERIOLOGICAL REVIEWS, 1971, 35 (03) : 235 - +
  • [12] Helical Conformation in the CA-SP1 Junction of the Immature HIV-1 Lattice Determined from Solid-State NMR of Virus-like Particles
    Bayro, Marvin J.
    Ganser-Pornillos, Barbie K.
    Zadrozny, Kaneil K.
    Yeager, Mark
    Tycko, Robert
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (37) : 12029 - 12032
  • [13] Structure of the Dimerization Interface in the Mature HIV-1 Capsid Protein Lattice from Solid State NMR of Tubular Assemblies
    Bayro, Marvin J.
    Tycko, Robert
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (27) : 8538 - 8546
  • [14] Site-Specific Structural Variations Accompanying Tubular Assembly of the HIV-1 Capsid Protein
    Bayro, Marvin J.
    Chen, Bo
    Yau, Wai-Ming
    Tycko, Robert
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2014, 426 (05) : 1109 - 1127
  • [15] ON THE NUCLEAR MAGNETIC RESONANCE IN METALS AND ALLOYS
    BLOEMBERGEN, N
    ROWLAND, TJ
    [J]. ACTA METALLURGICA, 1953, 1 (06): : 731 - 746
  • [16] Motions on the Millisecond Time Scale and Multiple Conformations of HIV-1 Capsid Protein: Implications for Structural Polymorphism of CA Assemblies
    Byeon, In-Ja L.
    Hou, Guangjin
    Han, Yun
    Suiter, Christopher L.
    Ahn, Jinwoo
    Jung, Jinwon
    Byeon, Chang-Hyeock
    Gronenborn, Angela M.
    Polenova, Tatyana
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (14) : 6455 - 6466
  • [17] Amantadine-induced conformational and dynamical changes of the influenza M2 transmembrane proton channel
    Cady, Sarah D.
    Hong, Mei
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (05) : 1483 - 1488
  • [18] Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers
    Cady, Sarah D.
    Schmidt-Rohr, Klaus
    Wang, Jun
    Soto, Cinque S.
    DeGrado, William F.
    Hong, Mei
    [J]. NATURE, 2010, 463 (7281) : 689 - U127
  • [19] Structure of Amantadine-Bound M2 Transmembrane Peptide of Influenza A in Lipid Bilayers from Magic-Angle-Spinning Solid-State NMR: The Role of Ser31 in Amantadine Binding
    Cady, Sarah D.
    Mishanina, Tatiana V.
    Hong, Me
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2009, 385 (04) : 1127 - 1141
  • [20] Proton Association Constants of His 37 in the Influenza-A M218-60 Dimer-of-Dimers
    Colvin, Michael T.
    Andreas, Loren B.
    Chou, James J.
    Griffin, Robert G.
    [J]. BIOCHEMISTRY, 2014, 53 (38) : 5987 - 5994