The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China

被引：0

作者：

Zhou, Ya Fu ^{[1
,2
]}

Wang, Yu Chao ^{[1
,2
]}

Ni, Xi Lu ^{[3
]}

Mao, Shao Li ^{[1
,2
]}

机构：

[1] Inst Bot Shaanxi Prov, Xian Bot Garden Shaanxi Prov, Xian, Shaanxi, Peoples R China

[2] Shaanxi Engn Res Ctr Conservat & Utilizat Bot Res, Xian, Shaanxi, Peoples R China

[3] Ningxia Forestry Inst, Yinchuan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Fargesia qinlingensis; chloroplast genome; endemic species; GIANT PANDAS;

D O I：

10.1080/23802359.2018.1473739

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a small single copy (SSC) region of 12,826 bp, separated by two inverted repeat (IR) regions of 21,797 bp each. The GC content was 38.9%, and in the LSC, SSC, and IR regions were 37.0%, 33.2%, and 44.2%, respectively. A total of 130 genes were annotated, including 83 protein-coding genes (PCGs), 39 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that F. qinlingensis was more closely related to the species of F. denudata.

引用

页码：613 / 614

页数：2

共 4 条

[1] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[2] 海拔对大熊猫主食竹结构、营养及大熊猫季节性分布的影响 [J].

李亚军 ;

蔡琼 ;

刘雪华 ;

Melissa Songer ;

武鹏峰 ;

贾晓东 ;

何祥博 .

兽类学报, 2016, 36 (01) :24-35

[3]

Liang TR., 2000, CHINA FOREST, P1915

[4]

Liu Xue-hua, 2008, Shengtaixue Zazhi, V27, P2123

← 1 →