Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface

被引:108
作者
Siegrist, M. Sloan [1 ]
Swarts, Benjamin M. [2 ]
Fox, Douglas M. [1 ]
Lim, Shion An [3 ]
Bertozzi, Carolyn R. [1 ,3 ,4 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Cent Michigan Univ, Dept Chem, Mt Pleasant, MI 48859 USA
[3] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[4] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA
关键词
metabolic labeling; click chemistry; bioorthogonal; peptidoglycan; glycolipid; protein secretion; D-AMINO ACIDS; SITE-SPECIFIC INCORPORATION; FREE CLICK CHEMISTRY; ESCHERICHIA-COLI; MYCOBACTERIUM-TUBERCULOSIS; OUTER-MEMBRANE; CROSS-LINKING; PEPTIDOGLYCAN BIOSYNTHESIS; INTRACELLULAR REPLICATION; CHEMICAL REPORTERS;
D O I
10.1093/femsre/fuu012
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The cell surface is the essential interface between a bacterium and its surroundings. Composed primarily of molecules that are not directly genetically encoded, this highly dynamic structure accommodates the basic cellular processes of growth and division as well as the transport of molecules between the cytoplasm and the extracellular milieu. In this review, we describe aspects of bacterial growth, division and secretion that have recently been uncovered by metabolic labeling of the cell envelope. Metabolite derivatives can be used to label a variety of macromolecules, from proteins to non-genetically-encoded glycans and lipids. The embedded metabolite enables precise tracking in time and space, and the versatility of newer chemoselective detection methods offers the ability to execute multiple experiments concurrently. In addition to reviewing the discoveries enabled by metabolic labeling of the bacterial cell envelope, we also discuss the potential of these techniques for translational applications. Finally, we offer some guidelines for implementing this emerging technology.
引用
收藏
页码:184 / 202
页数:19
相关论文
共 185 条
[91]   The Peptidoglycan of Mycobacterium abscessus Is Predominantly Cross-Linked by L,D-Transpeptidases [J].
Lavollay, Marie ;
Fourgeaud, Martine ;
Herrmann, Jean-Louis ;
Dubost, Lionel ;
Marie, Arul ;
Gutmann, Laurent ;
Arthur, Michel ;
Mainardi, Jean-Luc .
JOURNAL OF BACTERIOLOGY, 2011, 193 (03) :778-782
[92]   Reconstitution of Peptidoglycan Cross-Linking Leads to Improved Fluorescent Probes of Cell Wall Synthesis [J].
Lebar, Matthew D. ;
May, Janine M. ;
Meeske, Alexander J. ;
Leiman, Sara A. ;
Lupoli, Tania J. ;
Tsukamoto, Hirokazu ;
Losick, Richard ;
Rudner, David Z. ;
Walker, Suzanne ;
Kahne, Daniel .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (31) :10874-10877
[93]   PROTOPLASTS AND L-TYPE GROWTH OF ESCHERICHIA-COLI [J].
LEDERBERG, J ;
STCLAIR, J .
JOURNAL OF BACTERIOLOGY, 1958, 75 (02) :143-160
[94]   LL-DIAMINOPIMELIC ACID CONTAINING PEPTIDOGLYCANS IN WALLS OF STREPTOMYCES SP AND OF CLOSTRIDIUM-PERFRINGENS (TYPE-A) [J].
LEYHBOUILLE, M ;
BONALY, R ;
GHUYSEN, JM ;
TINELLI, R ;
TIPPER, D .
BIOCHEMISTRY, 1970, 9 (15) :2944-+
[95]   Activity-based protein profiling: an enabling technology in chemical biology research [J].
Li, Nan ;
Overkleeft, Herman S. ;
Florea, Bogdan I. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2012, 16 (1-2) :227-233
[96]   A new metabolic cell-wall labelling method reveals peptidoglycan in Chlamydia trachomatis [J].
Liechti, G. W. ;
Kuru, E. ;
Hall, E. ;
Kalinda, A. ;
Brun, Y. V. ;
VanNieuwenhze, M. ;
Maurelli, A. T. .
NATURE, 2014, 506 (7489) :507-+
[97]   Site-Specific Incorporation of Photo-Cross-Linker and Bioorthogonal Amino Acids into Enteric Bacterial Pathogens [J].
Lin, Shixian ;
Zhang, Zhenrun ;
Xu, Hao ;
Li, Lin ;
Chen, She ;
Li, Jie ;
Hao, Ziyang ;
Chen, Peng R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (50) :20581-20587
[98]   Discovery of aminoacyl-tRNA synthetase activity through cell-surface display of noncanonical amino acids [J].
Link, A. James ;
Vink, Mandy K. S. ;
Agard, Nicholas J. ;
Prescher, Jennifer A. ;
Bertozzi, Carolyn R. ;
Tirrell, David A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (27) :10180-10185
[99]   Presentation and detection of azide functionality in bacterial cell surface proteins [J].
Link, AJ ;
Vink, MKS ;
Tirrell, DA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (34) :10598-10602
[100]   Cell surface labeling of Escherichia coli via copper(I)-catalyzed [3+2] cycloaddition [J].
Link, AJ ;
Tirrell, DA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (37) :11164-11165