Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers

被引:25
|
作者
Hilmarsson, Hrannar Smari [1 ]
Hytonen, Timo [2 ,3 ]
Isobe, Sachiko [4 ]
Goransson, Magnus [1 ,5 ]
Toivainen, Tuomas [2 ]
Hallsson, Jon Hallsteinn [1 ]
机构
[1] Agr Univ Iceland, Fac Agr & Environm Sci, Reykjavik, Iceland
[2] Univ Helsinki, Viikki Plant Sci Ctr, Dept Agr Sci, Helsinki, Finland
[3] Univ Helsinki, Viikki Plant Sci Ctr, Dept Biosci, Helsinki, Finland
[4] KDRI, Chiba, Japan
[5] Norwegian Univ Life Sci, Dept Plant Sci, As, Norway
来源
PLOS ONE | 2017年 / 12卷 / 08期
关键词
MULTILOCUS GENOTYPE DATA; CULTIVATED STRAWBERRY; DIVERSITY ANALYSIS; LINKAGE MAP; X ANANASSA; GENOME; DOMESTICATION; ARABIDOPSIS; INFERENCE; MODEL;
D O I
10.1371/journal.pone.0183384
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The woodland strawberry, Fragaria vesca, holds great promise as a model organism. It not only represents the important Rosaceae family that includes economically important species such as apples, pears, peaches and roses, but it also complements the well-known model organism Arabidopsis thaliana in key areas such as perennial life cycle and the development of fleshy fruit. Analysis of wild populations of A. thaliana has shed light on several important developmental pathways controlling, for example, flowering time and plant growth, suggesting that a similar approach using F. vesca might add to our understanding on the development of rosaceous species and perennials in general. As a first step, 298 F. vesca plants were analyzed using microsatellite markers with the primary aim of analyzing population structure and distribution of genetic diversity. Of the 68 markers tested, 56 were polymorphic, with an average of 4.46 alleles per locus. Our analysis partly confirms previous classification of F. vesca subspecies in North America and suggests two groups within the subsp. bracteata. In addition, F. vesca subsp. vesca forms a single global population with evidence that the Icelandic group is a separate cluster from the main Eurasian population.
引用
收藏
页数:17
相关论文
共 50 条
  • [21] Hierarchical analysis of genetic population structure in the noisy miner using DNA microsatellite markers
    Abbott, CL
    Pòldmaa, T
    Lougheed, S
    Clarke, M
    Boag, PT
    CONDOR, 2002, 104 (03): : 652 - 656
  • [22] Population genetic analysis of five northwest Punjabi endogamous groups using microsatellite markers
    Kaur, Manpreet
    Badaruddoza
    META GENE, 2016, 10 : 108 - 117
  • [23] Analysis of population genetic structure of Indian Anopheles culicifacies species A using microsatellite markers
    Sujatha Sunil
    Om P Singh
    Nutan Nanda
    Kamaraju Raghavendra
    BP Niranjan Reddy
    Sarala K Subbarao
    Parasites & Vectors, 6
  • [24] Genetic Analysis of Porphyra yezoensis Using Microsatellite Markers
    Kong, Fanna
    Mao, Yunxiang
    Yang, Hui
    Qu, Haijun
    Yan, Xinghong
    Wang, Li
    PLANT MOLECULAR BIOLOGY REPORTER, 2009, 27 (04) : 496 - 502
  • [25] Genetic Analysis of Porphyra yezoensis Using Microsatellite Markers
    Fanna Kong
    Yunxiang Mao
    Hui Yang
    Haijun Qu
    Xinghong Yan
    Li Wang
    Plant Molecular Biology Reporter, 2009, 27 : 496 - 502
  • [26] Genetic diversity of Fragaria iinumae and F-nipponica based on microsatellite markers
    Njuguna, Wambui
    Bassil, Nahla
    Hummer, Kim
    Davis, Tom
    HORTSCIENCE, 2007, 42 (04) : 915 - 915
  • [27] Genetic diversity and population structure analysis of Saccharum and Erianthus genera using microsatellite (SSR) markers
    Ali, Ahmad
    Pan, Yong-Bao
    Wang, Qin-Nan
    Wang, Jin-Da
    Chen, Jun-Lu
    Gao, San-Ji
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [28] Genetic diversity and population structure analysis of Saccharum and Erianthus genera using microsatellite (SSR) markers
    Ahmad Ali
    Yong-Bao Pan
    Qin-Nan Wang
    Jin-Da Wang
    Jun-Lü Chen
    San-Ji Gao
    Scientific Reports, 9
  • [29] Genetic characterization and bottleneck analysis of Maghateer camel population in Saudi Arabia using microsatellite markers
    Mahmoud, A. H.
    Abou-tarboush, F. M.
    Alshaikh, M. A.
    Aljumaah, R. S.
    JOURNAL OF KING SAUD UNIVERSITY SCIENCE, 2020, 32 (02) : 1353 - 1358
  • [30] Population genetic analysis and origin discrimination of snow crab (Chionoecetes opilio) using microsatellite markers
    Jung-Ha Kang
    Jung-Youn Park
    Eun-Mi Kim
    Hyun-Sook Ko
    Molecular Biology Reports, 2013, 40 : 5563 - 5571