Population genetic analysis of a global collection of Fragaria vesca using microsatellite markers

被引:25
|
作者
Hilmarsson, Hrannar Smari [1 ]
Hytonen, Timo [2 ,3 ]
Isobe, Sachiko [4 ]
Goransson, Magnus [1 ,5 ]
Toivainen, Tuomas [2 ]
Hallsson, Jon Hallsteinn [1 ]
机构
[1] Agr Univ Iceland, Fac Agr & Environm Sci, Reykjavik, Iceland
[2] Univ Helsinki, Viikki Plant Sci Ctr, Dept Agr Sci, Helsinki, Finland
[3] Univ Helsinki, Viikki Plant Sci Ctr, Dept Biosci, Helsinki, Finland
[4] KDRI, Chiba, Japan
[5] Norwegian Univ Life Sci, Dept Plant Sci, As, Norway
来源
PLOS ONE | 2017年 / 12卷 / 08期
关键词
MULTILOCUS GENOTYPE DATA; CULTIVATED STRAWBERRY; DIVERSITY ANALYSIS; LINKAGE MAP; X ANANASSA; GENOME; DOMESTICATION; ARABIDOPSIS; INFERENCE; MODEL;
D O I
10.1371/journal.pone.0183384
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The woodland strawberry, Fragaria vesca, holds great promise as a model organism. It not only represents the important Rosaceae family that includes economically important species such as apples, pears, peaches and roses, but it also complements the well-known model organism Arabidopsis thaliana in key areas such as perennial life cycle and the development of fleshy fruit. Analysis of wild populations of A. thaliana has shed light on several important developmental pathways controlling, for example, flowering time and plant growth, suggesting that a similar approach using F. vesca might add to our understanding on the development of rosaceous species and perennials in general. As a first step, 298 F. vesca plants were analyzed using microsatellite markers with the primary aim of analyzing population structure and distribution of genetic diversity. Of the 68 markers tested, 56 were polymorphic, with an average of 4.46 alleles per locus. Our analysis partly confirms previous classification of F. vesca subspecies in North America and suggests two groups within the subsp. bracteata. In addition, F. vesca subsp. vesca forms a single global population with evidence that the Icelandic group is a separate cluster from the main Eurasian population.
引用
收藏
页数:17
相关论文
共 50 条
  • [1] EVALUATION OF THE OUTBREEDING LEVEL OF THE STRAWBERRY FRAGARIA-VESCA L USING GENETIC-MARKERS
    IRKAEVA, NM
    ANKUDINOVA, IN
    GENETIKA, 1994, 30 (06): : 816 - 822
  • [2] Genetic dissection of the (poly)phenol profile of diploid strawberry (Fragaria vesca) fruits using a NIL collection
    Urrutia, Maria
    Schwab, Wilfried
    Hoffmann, Thomas
    Monfort, Amparo
    PLANT SCIENCE, 2016, 242 : 151 - 168
  • [3] Genetic Diversity and Population Structure Analysis of Dalbergia Odorifera Germplasm and Development of a Core Collection Using Microsatellite Markers
    Liu, Fu-Mei
    Zhang, Ning-Nan
    Liu, Xiao-Jin
    Yang, Zeng-Jiang
    Jia, Hong-Yan
    Xu, Da-Ping
    GENES, 2019, 10 (04)
  • [4] Genetic variation analysis of Hassan sheep population using microsatellite markers
    Sharma, R
    Pandey, AK
    Kumar, D
    Jain, A
    Malik, G
    Gour, DS
    Ahlawat, SPS
    KOREAN JOURNAL OF GENETICS, 2006, 28 (01): : 43 - 51
  • [5] Analysis of genetic variability in the Czech Dachshund population using microsatellite markers
    Pribanova, M.
    Horak, P.
    Schroeffelova, D.
    Urban, T.
    Bechynova, R.
    Musilova, L.
    JOURNAL OF ANIMAL BREEDING AND GENETICS, 2009, 126 (04) : 311 - 318
  • [6] Genetic analysis of the wild strawberry (Fragaria vesca) volatile composition
    Urrutia, Maria
    Rambla, Jose L.
    Alexiou, Konstantinos G.
    Granell, Antonio
    Monfort, Amparo
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2017, 121 : 99 - 117
  • [7] Development of microsatellite markers in Fragaria, their use in genetic diversity analysis, and their potential for genetic linkage mapping
    Hadonou, AM
    Sargent, DJ
    Wilson, F
    James, CM
    Simpson, DW
    GENOME, 2004, 47 (03) : 429 - 438
  • [8] Genetic diversity, population structure and a core collection establishment of Pinus yunnanensis using microsatellite markers
    Miao, Yingchun
    Gao, Chengjie
    Li, Jin
    Liu, Zirui
    Cui, Kai
    EUROPEAN JOURNAL OF FOREST RESEARCH, 2023, 142 (06) : 1439 - 1451
  • [9] Genetic diversity, population structure and a core collection establishment of Pinus yunnanensis using microsatellite markers
    Yingchun Miao
    Chengjie Gao
    Jin Li
    Zirui Liu
    Kai Cui
    European Journal of Forest Research, 2023, 142 : 1439 - 1451
  • [10] Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers
    Ball, AO
    Chapman, RW
    MOLECULAR ECOLOGY, 2003, 12 (09) : 2319 - 2330