Voxel-based 18F-FET PET segmentation and automatic clustering of tumor voxels: A significant association with IDH1 mutation status and survival in patients with gliomas
Introduction Aim was to develop a full automatic clustering approach of the time-activity curves (TAC) from dynamic F-18-FET PET and evaluate its association with IDH1 mutation status and survival in patients with gliomas. Methods Thirty-seven patients (mean age: 45 +/- 13 y) with newly diagnosed gliomas and dynamic F-18-FET PET before any histopathologic investigation or treatment were retrospectively included. Each dynamic F-18-FET PET was realigned to the first image and spatially normalized in the Montreal Neurological Institute template. A tumor mask was semi-automatically generated from Z-score maps. Each brain tumor voxel was clustered in one of the 3 following centroids using dynamic time warping and k-means clustering (centroid #1: slowly increasing slope; centroid #2: rapidly increasing followed by slowly decreasing slope; and centroid #3: rapidly increasing followed by rapidly decreasing slope). The percentage of each dynamic F-18-FET TAC within tumors and other conventional F-18-FET PET parameters (maximum and mean tumor-to-brain ratios [TBRmax and TBRmean], time-to-peak [TTP] and slope) was compared between wild-type and IDH1 mutant tumors. Their prognostic value was assessed in terms of progression free-survival (PFS) and overall survival (OS) by Kaplan-Meier estimates. Results Twenty patients were IDH1 wild-type and 17 IDH1 mutant. Higher percentage of centroid #1 and centroid #3 within tumors were positively (P = 0.016) and negatively (P = 0.01) correlated with IDH1 mutated status. Also, TBRmax, TBRmean, TTP, and slope discriminated significantly between tumors with and without IDH1 mutation (P range 0.01 to 0.04). Progression occurred in 22 patients (59%) at a median of 13.1 months (7.6-37.6 months) and 13 patients (35%) died from tumor progression. Patients with a percentage of centroid #1 > 90% had a longer survival compared with those with a percentage of centroid #1 < 90% (P = 0.003 for PFS and P = 0.028 for OS). This remained significant after stratification on IDH1 mutation status (P = 0.029 for PFS and P = 0.034 for OS). Compared to other conventional F-18-FET PET parameters, TTP and slope were associated with PFS and OS (P range 0.009 to 0.04). Conclusions Based on dynamic F-18-FET PET acquisition, we developed a full automatic clustering approach of TAC which appears to be a valuable noninvasive diagnostic and prognostic marker in patients with gliomas.
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Abraham, Alexandre
Pedregosa, Fabian
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Pedregosa, Fabian
Eickenberg, Michael
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Eickenberg, Michael
Gervais, Philippe
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Gervais, Philippe
Mueller, Andreas
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Univ Bonn, Inst Comp Sci 6, Bonn, GermanyINRIA Saclay Ile de France, Parietal Team, Saclay, France
Mueller, Andreas
Kossaifi, Jean
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Univ London Imperial Coll Sci Technol & Med, Dept Comp, London, EnglandINRIA Saclay Ile de France, Parietal Team, Saclay, France
Kossaifi, Jean
Gramfort, Alexandre
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, France
CNRS LTCI, Telecom ParisTech, Inst Mines Telecom, Paris, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Gramfort, Alexandre
Thirion, Bertrand
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Thirion, Bertrand
Varoquaux, Gael
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
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Univ Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA
Cohen, Adam L.
Holmen, Sheri L.
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Univ Utah, Huntsman Canc Inst, Dept Surg, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA
Holmen, Sheri L.
Colman, Howard
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Univ Utah, Huntsman Canc Inst, Dept Neurosurg, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Abraham, Alexandre
Pedregosa, Fabian
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Pedregosa, Fabian
Eickenberg, Michael
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Eickenberg, Michael
Gervais, Philippe
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Gervais, Philippe
Mueller, Andreas
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Univ Bonn, Inst Comp Sci 6, Bonn, GermanyINRIA Saclay Ile de France, Parietal Team, Saclay, France
Mueller, Andreas
Kossaifi, Jean
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Univ London Imperial Coll Sci Technol & Med, Dept Comp, London, EnglandINRIA Saclay Ile de France, Parietal Team, Saclay, France
Kossaifi, Jean
Gramfort, Alexandre
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, France
CNRS LTCI, Telecom ParisTech, Inst Mines Telecom, Paris, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Gramfort, Alexandre
Thirion, Bertrand
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
Thirion, Bertrand
Varoquaux, Gael
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INRIA Saclay Ile de France, Parietal Team, Saclay, France
CEA, DSV, I2BM, Neurospin, F-91191 Gif Sur Yvette, FranceINRIA Saclay Ile de France, Parietal Team, Saclay, France
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Univ Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA
Cohen, Adam L.
Holmen, Sheri L.
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Univ Utah, Huntsman Canc Inst, Dept Surg, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA
Holmen, Sheri L.
Colman, Howard
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Univ Utah, Huntsman Canc Inst, Dept Neurosurg, Salt Lake City, UT 84112 USAUniv Utah, Huntsman Canc Inst, Dept Internal Med, Div Med Oncol, Salt Lake City, UT 84112 USA