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Fast high-resolution protein structure determination by using unassigned NMR data
被引:11
作者
:
Korukottu, Jegannath
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Korukottu, Jegannath
[
1
]
Bayrhuber, Monika
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Bayrhuber, Monika
[
1
]
Montaville, Pierre
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Montaville, Pierre
[
1
]
Vijayan, Vinesh
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Vijayan, Vinesh
[
1
]
Jung, Young-Sang
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Jung, Young-Sang
[
1
]
Becker, Stefan
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Becker, Stefan
[
1
]
Zweckstetter, Markus
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Zweckstetter, Markus
[
1
]
机构
:
[1]
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
来源
:
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
|
2007年
/ 46卷
/ 07期
关键词
:
genomics;
NMR spectroscopy;
protein structures;
structure elucidation;
D O I
:
10.1002/anie.200603213
中图分类号
:
O6 [化学];
学科分类号
:
0703 ;
摘要
:
(Figure Presented) The major bottleneck of rapid NMR-based structure determination is data analysis. The solution to this problem is a method that enables automatic high-resolution protein-structure determination from unassigned, experimental NMR data without manual intervention in less than 24 h. © 2007 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:1176 / 1179
页数:4
相关论文
共 28 条
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Protein structures hint at the shape of things to come
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Bayrhuber, Monika
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Ferber, Michael
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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Imperial, Julita
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Becker, Stefan
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2006,
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Toward high-resolution de novo structure prediction for small proteins
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Bradley, P
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0
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0
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Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Bradley, P
;
Misura, KMS
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0
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0
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Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Misura, KMS
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Baker, D
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0
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Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Baker, D
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Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
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Cornilescu, G
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NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
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Marquardt, JL
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NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
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Ottiger, M
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Bax, A
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NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
Bax, A
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JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
1998,
120
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[7]
ABACUS, a direct method for protein NMR structure computation via assembly of fragments
[J].
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Grishaev, A
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Steren, CA
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Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
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CLOUDS, a protocol for deriving a molecular proton density via NMR (vol 99, pg 6707, 2002)
[J].
Grishaev, A
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Grishaev, A
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Llinás, M
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Llinás, M
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PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
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99
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:10941
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Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE)
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Gronwald, W
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0
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Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
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Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Kalbitzer, HR
.
JOURNAL OF BIOMOLECULAR NMR,
2002,
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:271
-287
[10]
Automated NMR protein structure calculation
[J].
Güntert, P
论文数:
0
引用数:
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0
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RIKEN, Genom Sci Ctr, Yokohama, Kanagawa 2300045, Japan
RIKEN, Genom Sci Ctr, Yokohama, Kanagawa 2300045, Japan
Güntert, P
.
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY,
2003,
43
(3-4)
:105
-125
←
1
2
3
→
共 28 条
[1]
Protein structures hint at the shape of things to come
[J].
Abbott, A
论文数:
0
引用数:
0
h-index:
0
Abbott, A
.
NATURE,
2005,
435
(7042)
:547
-547
[2]
[Anonymous], ANGEW CHEM
[3]
BAX A, 1994, METHOD ENZYMOL, V239, P79
[4]
Production of recombinant Conkunitzin-S1 in Escherichia coli
[J].
Bayrhuber, Monika
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Bayrhuber, Monika
;
Graf, Roland
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Graf, Roland
;
Ferber, Michael
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Ferber, Michael
;
Zweckstetter, Markus
论文数:
0
引用数:
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h-index:
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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;
Imperial, Julita
论文数:
0
引用数:
0
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0
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Imperial, Julita
;
Garrett, James E.
论文数:
0
引用数:
0
h-index:
0
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
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;
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论文数:
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引用数:
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;
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论文数:
0
引用数:
0
h-index:
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Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Terlau, Heinrich
;
Becker, Stefan
论文数:
0
引用数:
0
h-index:
0
机构:
Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
Becker, Stefan
.
PROTEIN EXPRESSION AND PURIFICATION,
2006,
47
(02)
:640
-644
[5]
Toward high-resolution de novo structure prediction for small proteins
[J].
Bradley, P
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Bradley, P
;
Misura, KMS
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Misura, KMS
;
Baker, D
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Baker, D
.
SCIENCE,
2005,
309
(5742)
:1868
-1871
[6]
Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
[J].
Cornilescu, G
论文数:
0
引用数:
0
h-index:
0
机构:
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
Cornilescu, G
;
Marquardt, JL
论文数:
0
引用数:
0
h-index:
0
机构:
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
Marquardt, JL
;
Ottiger, M
论文数:
0
引用数:
0
h-index:
0
机构:
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
Ottiger, M
;
Bax, A
论文数:
0
引用数:
0
h-index:
0
机构:
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
Bax, A
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
1998,
120
(27)
:6836
-6837
[7]
ABACUS, a direct method for protein NMR structure computation via assembly of fragments
[J].
论文数:
引用数:
h-index:
机构:
Grishaev, A
;
Steren, CA
论文数:
0
引用数:
0
h-index:
0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
Steren, CA
;
Wu, B
论文数:
0
引用数:
0
h-index:
0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
Wu, B
;
Pineda-Lucena, A
论文数:
0
引用数:
0
h-index:
0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
Pineda-Lucena, A
;
论文数:
引用数:
h-index:
机构:
Arrowsmith, C
;
Llinás, M
论文数:
0
引用数:
0
h-index:
0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
Llinás, M
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2005,
61
(01)
:36
-43
[8]
CLOUDS, a protocol for deriving a molecular proton density via NMR (vol 99, pg 6707, 2002)
[J].
Grishaev, A
论文数:
0
引用数:
0
h-index:
0
Grishaev, A
;
Llinás, M
论文数:
0
引用数:
0
h-index:
0
Llinás, M
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2002,
99
(16)
:10941
-10941
[9]
Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE)
[J].
Gronwald, W
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Gronwald, W
;
Moussa, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Moussa, S
;
Elsner, R
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Elsner, R
;
Jung, A
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Jung, A
;
Ganslmeier, B
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Ganslmeier, B
;
Trenner, J
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Trenner, J
;
Kremer, W
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Kremer, W
;
Neidig, KP
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Neidig, KP
;
Kalbitzer, HR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Univ Regensburg, Dept Biophys & Phys Biochem, D-93040 Regensburg, Germany
Kalbitzer, HR
.
JOURNAL OF BIOMOLECULAR NMR,
2002,
23
(04)
:271
-287
[10]
Automated NMR protein structure calculation
[J].
Güntert, P
论文数:
0
引用数:
0
h-index:
0
机构:
RIKEN, Genom Sci Ctr, Yokohama, Kanagawa 2300045, Japan
RIKEN, Genom Sci Ctr, Yokohama, Kanagawa 2300045, Japan
Güntert, P
.
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY,
2003,
43
(3-4)
:105
-125
←
1
2
3
→