Epigenetic modifications in DNA could mimic oxidative DNA damage: A double-edged sword

被引:21
作者
Ito, Shinsuke [1 ]
Kuraoka, Isao [2 ]
机构
[1] RIKEN Ctr Integrat Med Sci, Lab Dev Genet, Yokohama, Kanagawa 2300045, Japan
[2] Osaka Univ Grad Sch Engn Sci, Grad Sch Engn Sci, Toyonaka, Osaka 5608531, Japan
关键词
DNA methylation; DNA demethylation; Deamination; TET proteins; TDG; Base excision repair; Mismatch repair; RNA-POLYMERASE-II; THYMINE-DNA; TET PROTEINS; GLYCOSYLASE; 5-METHYLCYTOSINE; 5-HYDROXYMETHYLCYTOSINE; 5-FORMYLCYTOSINE; METHYLATION; EXCISION; 5-CARBOXYLCYTOSINE;
D O I
10.1016/j.dnarep.2015.04.013
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Methylation of cytosine at the C5 position (5mC) represents an epigenetic modification that plays a fundamental role in embryonic development, transcriptional regulation, and other processes. It can also be a mutational hotspot at CpG dinucleotides as a result of spontaneous hydrolytic deamination of 5mC to thymine. The resulting G.T mismatch pair is recognized by thymine DNA glycosylase (TDG) and revereted to a G.C pair. Recent studies have shown that 5mC is consecutively catalyzed into 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) by a DNA dioxygenase from the ten eleven translocation (TET) family. Two oxidative cytosine derivatives, 5fC and 5caC, are eliminated by TDG during active DNA demethylation. Therefore, TDG has versatile roles in epigenetic regulation to control the gene expression as well as the DNA repair pathway to prevent mutagenesis. 5fC and 5caC serve as intermediate products of active DNA demethylation and also behave as DNA damages that threaten genomic integrity. Here, we discuss the potential functions of 5mC oxidative derivatives in epigenetic modification and DNA damage. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:52 / 57
页数:6
相关论文
共 61 条
[1]   Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies [J].
Abdel-Wahab, Omar ;
Mullally, Ann ;
Hedvat, Cyrus ;
Garcia-Manero, Guillermo ;
Patel, Jay ;
Wadleigh, Martha ;
Malinge, Sebastien ;
Yao, JinJuan ;
Kilpivaara, Outi ;
Bhat, Rukhmi ;
Huberman, Kety ;
Thomas, Sabrena ;
Dolgalev, Igor ;
Heguy, Adriana ;
Paietta, Elisabeth ;
Le Beau, Michelle M. ;
Beran, Miloslav ;
Tallman, Martin S. ;
Ebert, Benjamin L. ;
Kantarjian, Hagop M. ;
Stone, Richard M. ;
Gilliland, D. Gary ;
Crispino, John D. ;
Levine, Ross L. .
BLOOD, 2009, 114 (01) :144-147
[2]  
[Anonymous], 2005, DNA repair and mutagenesis
[3]  
BRANCH P, 1995, CANCER RES, V55, P2304
[4]   THE CPG DINUCLEOTIDE AND HUMAN GENETIC-DISEASE [J].
COOPER, DN ;
YOUSSOUFIAN, H .
HUMAN GENETICS, 1988, 78 (02) :151-155
[5]   Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability [J].
Cortazar, Daniel ;
Kunz, Christophe ;
Selfridge, Jim ;
Lettieri, Teresa ;
Saito, Yusuke ;
MacDougall, Eilidh ;
Wirz, Annika ;
Schuermann, David ;
Jacobs, Angelika L. ;
Siegrist, Fredy ;
Steinacher, Roland ;
Jiricny, Josef ;
Bird, Adrian ;
Schaer, Primo .
NATURE, 2011, 470 (7334) :419-U210
[6]   Thymine DNA Glycosylase Is Essential for Active DNA Demethylation by Linked Deamination-Base Excision Repair [J].
Cortellino, Salvatore ;
Xu, Jinfei ;
Sannai, Mara ;
Moore, Robert ;
Caretti, Elena ;
Cigliano, Antonio ;
Le Coz, Madeleine ;
Devarajan, Karthik ;
Wessels, Andy ;
Soprano, Dianne ;
Abramowitz, Lara K. ;
Bartolomei, Marisa S. ;
Rambow, Florian ;
Bassi, Maria Rosaria ;
Bruno, Tiziana ;
Fanciulli, Maurizio ;
Renner, Catherine ;
Klein-Szanto, Andres J. ;
Matsumoto, Yoshihiro ;
Kobi, Dominique ;
Davidson, Irwin ;
Alberti, Christophe ;
Larue, Lionel ;
Bellacosa, Alfonso .
CELL, 2011, 146 (01) :67-79
[7]   CpG islands and the regulation of transcription [J].
Deaton, Aimee M. ;
Bird, Adrian .
GENES & DEVELOPMENT, 2011, 25 (10) :1010-1022
[8]   Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates [J].
Globisch, Daniel ;
Muenzel, Martin ;
Mueller, Markus ;
Michalakis, Stylianos ;
Wagner, Mirko ;
Koch, Susanne ;
Brueckl, Tobias ;
Biel, Martin ;
Carell, Thomas .
PLOS ONE, 2010, 5 (12)
[9]   Genome-Wide Reprogramming in the Mouse Germ Line Entails the Base Excision Repair Pathway [J].
Hajkova, Petra ;
Jeffries, Sean J. ;
Lee, Caroline ;
Miller, Nigel ;
Jackson, Stephen P. ;
Surani, M. Azim .
SCIENCE, 2010, 329 (5987) :78-82
[10]   Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation [J].
Hashimoto, Hideharu ;
Hong, Samuel ;
Bhagwat, Ashok S. ;
Zhang, Xing ;
Cheng, Xiaodong .
NUCLEIC ACIDS RESEARCH, 2012, 40 (20) :10203-10214